Trinickia caryophylli: U0034_01790
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Entry
U0034_01790 CDS
T09722
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tcar
Trinickia caryophylli
Pathway
tcar03030
DNA replication
tcar03410
Base excision repair
tcar03420
Nucleotide excision repair
tcar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tcar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
U0034_01790 (ligA)
03410 Base excision repair
U0034_01790 (ligA)
03420 Nucleotide excision repair
U0034_01790 (ligA)
03430 Mismatch repair
U0034_01790 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tcar03032
]
U0034_01790 (ligA)
03400 DNA repair and recombination proteins [BR:
tcar03400
]
U0034_01790 (ligA)
Enzymes [BR:
tcar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
U0034_01790 (ligA)
DNA replication proteins [BR:
tcar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
U0034_01790 (ligA)
DNA repair and recombination proteins [BR:
tcar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
U0034_01790 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
U0034_01790 (ligA)
MMR (mismatch excision repair)
DNA ligase
U0034_01790 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
U0034_01790 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
MctB
BRCT_2
5_3_exonuc
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
WQE12184
LinkDB
All DBs
Position
1:complement(403995..406043)
Genome browser
AA seq
682 aa
AA seq
DB search
MARNTAEPPADQPAERAAWLRAQIERANYQYYVLDQPELPDAEYDRLFVALQAIEGEHPD
LITPDSPTQRVGGEAASGFAPVVHAVPMLSLNNGFADEDIEAFDRRCTEALGHAPIEYAC
ELKFDGLAIALRYENGRLVQAATRGDGATGEDVTRNVRTIRSIPLTLRGVDAPRVVEVRG
EVLMFRRDFEKLNARQRDAGQREFANPRNAAAGSLRQLDSKITAQRPLSFFSYGIGELAG
MPMPETHSALLDWYKTLGLPVCAEQAVVHGASGLLEFFRRIGEKRKSLPYDIDGVVYKVN
RRDEQDALGFVSRAPRFALAHKFPAEEATTELLDVYVNVGRTGAITPVARLKPVFVGGVT
VTNATLHNEDEVRRKDVRIGDTVIVRRAGDVIPELVSVVLERRPADAREFVMPTHCPVCG
SRIERLPDEAVARCTGGLFCPAQRKQAIWHFAQRRALDIDGLGEKIIDQLVDQNLVRTPA
DLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFVYGLGIRHVGESTAKDLARHF
GSLDPLMNATMDELLEVNDVGPVVAESIRQFFAEEHNLTVIEQLRAPGRVSWPEGPPAPR
APQGVLAGKTVVLTGTLPTYSREAAKEMLEAAGAKVSGSVSKKTDYVVAGAEAGSKLAKA
EELGIPVLDEDGMRTLLEGHKP
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaaacaccgctgaacctcccgcagaccaacccgccgagcgcgcggcctggctg
cgcgctcagatcgaacgcgcgaactaccagtattacgtgctcgaccagcccgagttgccc
gatgccgagtacgaccgcctgttcgtcgcgctccaggccatcgagggggagcatcccgat
ctgatcacgccggattcgcccacgcagcgcgtgggcggcgaggcggcaagcggttttgcg
cccgtggtccacgccgtgccgatgctgtcgttgaacaatggttttgccgacgaagacatc
gaagcattcgacaggcgctgcaccgaagcattgggccacgcgccgatcgagtacgcgtgc
gagctcaagttcgacgggctcgcaattgcgttgcgctacgagaatggccggctcgtgcag
gccgccacgcggggcgatggcgcgacgggcgaagacgtgacccggaacgtgcgcacgatc
cgctcgattcccctgacgctccgtggtgtagatgcgccgcgcgtcgtggaggtccgcggc
gaggtcctgatgttccggcgcgacttcgaaaagctcaatgcgcgccagcgcgacgcgggg
caacgcgagttcgccaatccgcgcaacgcggccgcgggcagcctgcgtcagctcgattcg
aagatcacggcacaacggccgctgtcgttcttctcctatggcatcggcgagcttgccggc
atgccgatgcccgagacgcacagcgcgctgctcgactggtacaagacgctcggcttgccg
gtgtgcgccgagcaggcggtcgtgcatggcgcgagcgggctgctcgagttcttccggcgc
atcggcgaaaagcgcaagtcgctgccgtacgacatcgacggtgtcgtctacaaggtcaac
cggcgcgacgagcaggatgcactgggcttcgtttcacgcgcgccgcgcttcgccctggca
cacaagtttccggccgaagaggcgacgacggagttgctcgatgtctatgtcaacgtgggc
cgcacgggggcgatcacgcccgtggcgcgcctgaagccggtattcgtcggcggtgtgacc
gttaccaatgcaacgctgcacaacgaagacgaagtgcggcgcaaggacgtgcgcatcggc
gacacggtcatcgtgcgccgcgccggcgacgtgatcccggaactcgtctcggttgtgctc
gaacggcgcccggccgatgcccgcgagttcgtgatgccgacgcactgccccgtatgcggc
tcgcggatcgagcgcctgcccgacgaggcagtggcgcgctgcaccggaggccttttctgc
cccgcgcagcgcaagcaggccatctggcacttcgcgcaaaggcgcgcgctcgatatcgac
gggctcggcgaaaagatcatcgatcaactcgtcgatcagaatctcgtgcgcacgccggcc
gatcttttcaacctcggctttgcgacgctcgcggaactcgaccgctttgcggagaagtcc
gcgcagaatctgctcgattcgctcgagaaagccaagcatacgacgcttgcgcgcttcgtc
tatgggctgggcattcgccatgtcggcgaatcgacggcgaaagacctcgcgcgacatttc
ggctcgctcgatccgctgatgaatgcgacgatggacgaactgctcgaggtcaacgacgtg
gggcccgtcgtggccgaatcgattcgtcagttcttcgccgaggagcacaatctcaccgtc
atcgagcaactgagggcgccgggccgcgtaagctggccggaagggccgccggcgccacgg
gcgccgcaaggcgtgctcgccggcaagacggtcgtgctcacgggcacgttgccgacctac
tcgcgcgaagcagcgaaagagatgctcgaggcggccggcgccaaagtttccggttcggtc
tcgaagaagaccgactacgtggtcgccggggccgaggcgggcagcaagctcgcgaaagcc
gaggaactcggcattccggtactcgacgaagacggtatgcgcacgctcctggagggtcat
aaaccatga
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