Theobroma cacao (cacao): 18590308
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Entry
18590308 CDS
T02994
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18590308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tcc03041
]
18590308
Spliceosome [BR:
tcc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
18590308
Complex C
U5 SnRNP specific factors
18590308
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFL1
EFG_III
MMR_HSR1
Roc
Ras
Septin
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
18590308
NCBI-ProteinID:
XP_017983575
UniProt:
A0AB32WY28
A0A061GU81
LinkDB
All DBs
Position
9:34048567..34054348
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AA seq
990 aa
AA seq
DB search
MDDNLYDEFGNYIGPEIESDQESEGEEEEEEEFPDRHAQEEGEESDGEAPPGASNGWITA
ANDVDMDNQIVLAEDKKYYPTAEEVYGEDVETLVMDEDEQPLEQPIIKPVKNVKFEVGVK
DSSTYVSTQFLIGLMSNPGLVRNVALVGHLQHGKTVFMDMLVEQTHHMNTFDENSEKHMR
YTDTRIDEQERRISIKAIPMSLVLEDSNSKSYLCNIMDTPGHVNFSDEMTAALRLADGAV
LIVDAAEGVMVNTERAIRHAIQERLPIVVVINKVDRLITELKLPAKDAYHKLRHTLEVIN
NHISAASTTAGNVPVIDPAAGNVCFASASAGWSFTLQSFAKLYVKLHGIPFDAEKFASRL
WGDIYYHPDTRAFKRKPPAGGGERSFVEFVLEPLYKIYSQVIGEHKKSVESTLAELGVTL
SNAAYKLNVRPLLRLACSTVFGSASGFTDMLVQHIPSPKDAAVKKVDHAYTGPKHSMIYK
AMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGRIQTGQTLRVLGEGYSPDDEEDMT
VKEVTKLWIYQARYRIPISSAPPGSWVLIEGVDASIMKTATLCNMDLDEDVYIFRPLQFN
TLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKD
LRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENG
VVSVDWSRKQLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKTLLGAVR
DSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIASEPLHRGSGQIIPTARRVAYSAFLMA
TPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGF
ETDLRYHTQGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGM
SEDVSINKFFDEAMVVELAQQAADLHQQMI
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggatgataacttgtatgatgagtttgggaactacattggccctgagattgagtccgac
caggagagtgaaggcgaggaagaagaagaagaagaattccctgacaggcatgcccaagag
gagggagaagaatctgatggtgaggctccacctggtgcatctaatgggtggattactgct
gctaatgatgttgatatggataatcagattgttcttgctgaggacaagaagtattacccc
actgctgaagaggtttatggtgaggatgttgagaccttggttatggatgaagatgagcag
cctctcgaacaacctattattaagcctgttaagaatgtcaagtttgaggttggagtcaag
gattcttcaacttatgtgtcaacccagtttcttattggtctgatgtcaaatccgggtttg
gtccgcaatgttgctcttgttggacacttgcagcatgggaagactgtgtttatggacatg
ttggttgagcaaacgcaccatatgaacacttttgatgaaaatagtgagaagcacatgaga
tacactgatacgagaattgatgagcaagagagaaggatatctatcaaggcaatcccaatg
tcacttgtccttgaggacagtaactcaaaatcctatctctgtaacatcatggacactcca
ggtcatgtgaatttttctgatgaaatgactgctgctcttaggcttgctgatggtgctgtg
ttaattgttgatgctgctgaaggagtgatggtaaacactgagagagctatacgtcatgca
atacaggagcgcctacctattgtagttgtaataaacaaagttgaccggctgataacagaa
cttaagttgcccgccaaggatgcttaccataagctaaggcataccctggaagtaatcaat
aaccacatatctgccgcctctacaaccgctggtaatgttccagttattgatcctgctgct
ggaaatgtttgttttgctagtgcaagtgcaggatggtccttcactttgcagtcatttgca
aaattatatgtcaaactccatggaattccatttgatgctgagaagtttgcatctcgtctt
tggggagatatttattatcatcctgatacgagggcttttaaaaggaaaccccctgctggt
ggaggagaacgatcatttgttgaatttgtgcttgaacccctttataagatatatagccag
gtgattggtgaacataagaagagtgtggagtcaactcttgcagagttgggcgtcactctt
agcaatgccgcttacaagttaaatgtaaggcctttactaaggctggcttgcagtacagtt
tttgggtcagcctcaggcttcactgatatgctggttcagcatataccatctcccaaggat
gctgcagttaagaaggttgatcatgcatatacaggacctaaacattctatgatttacaaa
gccatggttgattgtgatccttctggccccctaatggttaatgtgaccaaactatatccc
aagtcagattgtagcgtttttgatgcttttggtagagtttatagtggtagaattcaaaca
gggcagactttgagagtgctgggagaaggctattcaccagatgatgaggaggacatgaca
gtaaaagaagtaaccaaattatggatctaccaagctcgatatagaatacccataagcagt
gctcctcctggttcttgggttctcattgaaggtgttgatgcttcaattatgaaaactgcc
accctctgtaatatggatcttgatgaagatgtgtatatattccggcctttacagtttaat
actcttcctgttgtaaaaacagctactgagccattaaatcctagtgagttgcccaaaatg
gtggaagggcttcggaaaatcagcaaaagctatcctttggctattactaaagttgaggaa
tctggtgagcacactatattaggtactggagagttgtacttggactcaattatgaaggac
cttagggagctctattctgaggtggaagttaaggtggcagatcctgttgtctcattctgt
gaaacagtggtggagtcttcatcaatgaaatgctttgctgaaacacccaacaagaagaat
aaaataaccatgattgcagagccattggagagaggtcttgcagaggacattgagaatggt
gttgtaagtgttgattggagtcggaagcaacttggtgacttcttcaagacaaaatatgac
tgggatttgcttgctgcacgttccatctgggcatttggccctgataagcagggacctaac
attttattagatgatacactccctactgaagttgacaagacattgttgggtgctgtcagg
gattctattgtccaagggtttcagtggggtgctagagaaggacctctctgtgatgaacca
attagaaatgtcaagttcaaaatagtagatgcaaggattgcatctgagccattgcatcga
ggatctggacagatcatccccacagctcgacgtgtggcctattcagctttccttatggcg
acccctcgacttatggaaccagtatattatgtggagatacaaacgccaatcgactgtgtc
tctgctatctatacggtcttgtctcgtaggcgtggccatgttacggctgatgtcccacag
cctggaacgccagcttatattgtgaaggcatttttacctgtgatagagtcatttggattc
gagacagatctaaggtaccacacgcaagggcaagctttttgtctctcagtatttgaccac
tgggccatagttcctggagatcccctggacaagagcatagttttgcggcctctcgaacct
gcaccaatccagcaccttgctcgggagttcatggttaagacaaggcgtagaaagggaatg
agtgaagatgtgagcatcaacaagttctttgacgaggctatggtggtggagctggctcag
caggctgctgatcttcatcagcagatgatatag
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