Tigriopus californicus (tidepool copepod): 131882656
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Entry
131882656 CDS
T09700
Name
(RefSeq) nuclear receptor subfamily 1 group I member 3-like isoform X1
KO
K08536
liver X receptor alpha
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
131882656
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tcf03000
]
131882656
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
tcf03310
]
131882656
Transcription factors [BR:
tcf03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
131882656
Nuclear receptors [BR:
tcf03310
]
1. Thyroid hormone like
1H. Liver X receptor like receptor
131882656
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Cor1
Motif
Other DBs
NCBI-GeneID:
131882656
NCBI-ProteinID:
XP_059085861
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Position
6:complement(5455009..5468391)
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AA seq
498 aa
AA seq
DB search
MLQSHRDSEEFSSISSDPRCLGHQMDPRLLEVFHHRLAFQQQSMLDMPPQELMARFAKSH
GIDGAVKLLHDLQAYQRPELKYSVPFGMPPFAMNSSQPDFLSLKDKGEKKKRRSSPKHLS
CHVCGDRAPNHCHYGGIACFSCRAFFRRSVPKYDTYTCSSSSNCVVTPATRKNCQKCRFD
KCVDAGMKASWVLSDEEKLERLEKKRSRKGQCVISNDSSGSASPVSAYTPPSSQYDQMSE
SSEGQSRPASQESFGVPQESRILSYHEERWIDQWVGDLQTTRTTVEMSPQLLDQIVRLTH
TYETINTDTIVEFFKTVYCRIVKFVGEIESFSTLTDADKKSLLSKNMDMLSTIQLASSLH
TNGDGNLEAQFLYTGHYSEISHLRGNHGIAMEQIFVEPWAKSETHKNYFSSTIRQVAKLL
REDTKVSTLFQLVALFHTENVELDNKREIESVQEGMATLLHKYLKQRYGHQMANSTFSKL
MTLLFDLRCLAEILTGDS
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgcttcaaagtcatcgagactctgaggagttttcttccatttcatctgatccaaggtgc
ttgggtcatcaaatggatccccgcctcctggaagtgttccatcatcggttggctttccag
caacaatcaatgctcgacatgccacctcaagaactgatggctcgcttcgcaaagtcccat
ggcattgatggcgccgtgaagcttctccacgatcttcaggcataccagagacccgagtta
aagtattctgtgccatttggcatgcctccgttcgctatgaattcaagtcaacccgatttc
ctcagcctcaaagacaagggggaaaagaagaagagacgatcgagccccaaacatttgtcc
tgccatgtgtgtggggatcgtgctcccaatcattgccattacggtggcatcgcttgcttc
agttgccgagcctttttccgcaggtctgtgcccaagtatgacacctatacttgttcttca
agtagcaattgtgtcgtcactccagccacgagaaagaattgccaaaaatgccgctttgac
aaatgtgtggacgctggtatgaaagcctcttgggtgctttccgatgaagagaagctggaa
cgactcgagaagaaacgttccaggaagggacaatgtgtcatctcgaatgattcgtcggga
tccgcaagcccggtctccgcctacacgccccccagctcccaatacgatcagatgagcgag
tccagcgagggccaatctcgaccagcatctcaggaatcgtttggggtgcctcaggagtcc
cgaattctctcctaccacgaggaaaggtggattgatcagtgggttggggacctgcaaacc
actcgaaccacagtcgagatgagtcctcagcttttggatcagattgttcgtctcacccac
acttacgagaccatcaatacggacacgatcgtggagtttttcaagactgtctactgccgt
attgtaaagttcgtgggcgagatcgaaagcttctcaaccctcaccgatgcggacaaaaag
agtctcctctccaaaaatatggacatgctctccacgatccagttggcctcttctcttcac
accaacggcgatggcaatcttgaggctcaattcctttacacgggccattacagcgagatc
tctcatcttcgaggcaatcacggcattgccatggagcagatatttgtagagccgtgggcg
aagagcgagactcacaagaactatttctcgtccaccattcgtcaagttgcaaaactcctc
cgcgaagataccaaagtgagcaccttgttccaattggtggccctattccataccgagaat
gtggagctggacaacaaacgcgagattgagtcggttcaggaaggcatggctactcttctc
cataagtacctcaaacaaagatacggccaccaaatggccaactcaaccttttcgaaactc
atgactttgctattcgatttgaggtgcttggccgagatcctcaccggagactcttga
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