Tigriopus californicus (tidepool copepod): 131886188
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Entry
131886188 CDS
T09700
Name
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
131886188
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tcf03400
]
131886188
Enzymes [BR:
tcf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
131886188
DNA repair and recombination proteins [BR:
tcf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
131886188
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
131886188
NCBI-ProteinID:
XP_059090430
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All DBs
Position
9:8477757..8482811
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AA seq
739 aa
AA seq
DB search
MAMTQSSADLTSRRMAFRDLADFCQAVVNVGPKSGQDAKGRKLTSFLQFCRTQWGPSTSL
FPLIRLLLPQLDRERGSYGIKETVLARLFIRSLGLGEGSADALRLKNFRAPKGLGSQSDT
GDFAAVLYAIIKDRGYPDGQLSVNQVNSFLDQLAEAGAQGGQRIQIETLLMDVFKKMSPV
QVKWLVRIILKDMRLGLGQSAIFKAVHPDAKELYEVNANLGKVCEQLKDPSKRLNEIAVQ
LFHPFKPMLAERGVLERVEQQMGHKSFFIEVKYDGERLQIHKDHNDAYKYFSRNCHDFTS
DFGDSPREWGSFTQILSKCLSSHVRSVILDGEICAYNYQTDCLTLKGDKMNIRGLKSDDP
MYQQCLYAYDVLFLNGEVLTNKPLRERIEILKSVVQERKGRIHFAQRCQGSSKAEVIQAL
NEAIDRREEGIVLKDTLSIYKPNARSGGGWLKIKPDYSNQLTDQCDLVVMGGYYGTGRKG
RGIISHFLLGVLAATQEDKKDHEPSHGHREIHSLCRVGSGYSMKELYDLLQRLEPHFIKA
KWDSGPSNDLLRVDDFGLRMGREKPDVVISPKKSVILQINAAEVIASDGYYTGCTLRFPR
VEQIRTDKTLEDCMTTHDLETIRREAQGKLSRRYVESEASDEPSKKRRRKVTVGAASQSV
GLAKAFGPTDLSTVMIESHNLKDQVIVIEPTNGVLKAQLEAIVVKHGGIVEQNPVEGRTF
CYVETGMKMKAKSVDAKSL
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgacgcagtctagtgctgatttgacttcgcgccgaatggcgtttcgagatctg
gccgatttttgtcaagccgtggtcaatgtgggcccgaaaagcggccaagacgccaagggt
agaaagttaaccagtttcctccagttctgccgtactcaatggggcccatcgacgtccctg
tttccgctaatacgtttacttttgcctcaattggaccgtgaacgcggctcgtacggcatt
aaagaaaccgttttggcccggctgttcattcgctcgttgggcttgggtgagggcagtgcc
gacgctctgcggctgaaaaacttccgagctcccaaaggcttaggcagccaaagtgatacg
ggcgactttgccgcagtgctctacgccataattaaggaccggggctatcccgatggtcag
ttgtcagtgaatcaggtgaactcgtttttggaccaattagccgaagcgggtgctcaggga
ggtcaacgcatccagattgagacccttctcatggatgtgttcaaaaagatgagtcccgtg
caagtgaaatggctggttcgcattattctcaaagacatgcggctgggcttaggtcaaagc
gccatcttcaaggcagttcaccccgacgccaaagaattgtacgaggtgaatgctaatctg
ggaaaagtgtgcgaacaactgaaggacccctcaaagcgattgaacgagattgcggttcag
ttgttccatccgttcaaacccatgttggctgaaaggggcgttttggaacgagtggaacaa
caaatggggcataaatccttcttcattgaggtgaaatacgacggtgaacgtcttcaaatt
cacaaggaccacaatgatgcttacaaatatttctctcggaattgccacgatttcacgagc
gatttcggagactcgcctcgtgaatggggaagcttcacgcaaatcctctccaaatgcctt
tctagtcacgtgcgcagtgtcattcttgacggcgagatttgtgcctacaactaccaaacc
gattgtctcaccctcaagggcgacaagatgaacattcgtggcctgaaatccgatgatccc
atgtaccagcaatgcttatatgcttacgatgtacttttcctcaatggcgaagtcctgacc
aataagccgttgagagaacggatcgagatcctcaagtcagtggtccaagagcgcaaaggg
cggattcattttgcccaaaggtgtcaaggctcgtccaaggccgaagtgattcaggccttg
aatgaagccatagaccgtcgggaagagggtatcgtcctcaaagacaccctcagcatctat
aaacccaatgcccggagcggtggtggttggttgaagatcaagccggattattccaatcaa
ctaaccgatcaatgcgatctcgttgtcatgggaggttactacggcacagggcgcaaaggg
cgaggtattatctcgcattttctcttgggggtcttagctgctacacaagaggacaaaaaa
gatcatgagccaagtcacgggcatcgtgagatccattccctttgtcgagtaggatccggt
tacagcatgaaggaactctatgaccttttgcaaagactagagcctcatttcattaaggcc
aagtgggactccgggccatcaaatgatctgcttcgagtggatgatttcggcctaaggatg
ggtcgagaaaagccggatgtggtcatttctcccaagaagtccgtcatcttgcaaatcaat
gcagcggaggtgatcgctagtgacggctattacacgggatgtactttgagatttccacga
gtggaacagattcgaacggataaaacactggaagattgcatgaccacccatgatttggag
acgattcgtcgcgaagctcaaggcaagttaagccgtcgttacgtggaatcggaggcctca
gacgagccgtccaaaaagcgtcgacgcaaagtcactgtaggagcagccagtcaatcggtt
ggtttggctaaggccttcggtcccacggacctctccacggtcatgattgagtcccataat
ctcaaagaccaagtgattgtgattgagccgaccaatggcgttttgaaggctcaactggag
gcgattgtggtcaaacatggtgggattgtggaacaaaatcccgtcgaaggacgaaccttc
tgttacgtggagacaggtatgaagatgaaggccaaaagcgtcgacgcaaagtcactgtag
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