Tigriopus californicus (tidepool copepod): 131889650
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Entry
131889650 CDS
T09700
Name
(RefSeq) TNF receptor-associated factor 6-like
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf04120
Ubiquitin mediated proteolysis
tcf04140
Autophagy - animal
tcf04144
Endocytosis
tcf04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
131889650
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
131889650
04140 Autophagy - animal
131889650
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
131889650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tcf04131
]
131889650
04121 Ubiquitin system [BR:
tcf04121
]
131889650
Enzymes [BR:
tcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
131889650
Membrane trafficking [BR:
tcf04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
131889650
Ubiquitin system [BR:
tcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
131889650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-C3HC4_2
zf-C3HC4
zf-RING_2
TRAF3_RING
zf-TRAF
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4_3
zf-TRAF_2
zf-rbx1
Sina_ZnF
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
131889650
NCBI-ProteinID:
XP_059094776
LinkDB
All DBs
Position
10:10558175..10559878
Genome browser
AA seq
485 aa
AA seq
DB search
MASPMASTSSSVEPSGQHEKINIIHRGRHYFQGGYDFDFVEDLDRKYECPICLLCQRNPH
QTSCGHRFCYSCIITWLNEGRTCPKDNCSLGEGDIFPDAMAHREILQLLVKCPRADQGCT
NVTRLADASIHVERCSFKKEQDQSLHPLQSPPRPVSIHEESLTCPSCGETVDEISEQHDP
KNLICPNAAIACPFTSAGCSERILRKNLQGHVQGQTQLHMQLLCDKLMKLHQIQSSSVVC
DQQVVEAKINENSGPESLPGDEPLMRSTEMRLSGSNFQAIQKLLKDVFQRVVQLEQRNCQ
LEIANEQLTQRLASAVNLKEESRMEEMGRYCNGNYLWRIKNFSDFHEKMRQAHSLVLYSR
GFYTSPFGYKLCLRSNVTLVNGEEHLGLYVHVMRGENDDTLHWPFSGSITMTILNLQEDR
IHKEDFSETMVTAQKMKAFERTVNAERNHFGFGFGEFVRVNGLYSGGFVSNEDNLVIRVS
VMCNE
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccccaatggcctcaacgtcatcttccgttgagccgagtggacagcatgaaaaa
atcaacatcattcatcgtggtcggcattatttccagggtggatacgatttcgactttgtt
gaggatctggaccgcaagtacgagtgtcccatttgtctcctatgccaaagaaatccgcat
cagacaagttgcggtcatcgattttgttattcttgtattatcacttggctcaatgaaggt
cgaacgtgtcccaaagacaattgcagcctcggcgaaggggacatctttccggatgccatg
gcccacagagaaatcctccagcttctagtgaaatgtcccagagcggatcaaggctgcacc
aacgtgacacgcctagcggatgcgtccattcatgttgagcggtgttctttcaagaaagag
caagaccagtctcttcatccgcttcaaagcccacctcgacccgtgtcaattcacgaagaa
agcctcacatgcccttcatgtggcgaaacggtggatgagatttcggaacaacacgaccct
aagaatctgatctgtcccaatgccgccatagcctgccctttcacatccgccgggtgctcg
gagcgaatcctgagaaaaaatctgcagggccacgttcagggtcagactcaacttcacatg
caactcctttgtgataagctcatgaaacttcaccagattcaaagcagttccgtcgtgtgc
gaccagcaagtggtcgaagccaagatcaatgaaaactctggccccgagagtctacccggc
gatgagcccctgatgagatcgaccgaaatgagactttccggatcgaattttcaagccatc
cagaagcttttgaaagatgtgtttcagcgtgtggtccagttggaacaaagaaactgccaa
ttagaaatagctaacgagcaactcactcaacgcttggcaagtgcggttaatctcaaggag
gagtctcgtatggaggagatgggccgatattgtaatggcaattacctttggcgcatcaag
aatttttcggatttccacgaaaaaatgcgccaagcccattcgttagttctttactcgcgg
ggtttctacacctctccctttggctacaagttgtgtttgagaagcaatgtgaccttggtt
aatggcgaagaacatcttgggctctatgtccatgtaatgcgaggggaaaacgacgacacg
cttcattggcccttttccggcagcatcacaatgaccatcctcaacttgcaagaggaccgg
atccataaggaggatttttcagagaccatggtcaccgcccaaaagatgaaggcctttgag
cgcacggtgaacgcagagcgaaatcatttcgggtttgggttcggcgagtttgttcgagtg
aatggcctttattcagggggattcgtgtctaatgaggataatctggtcattcgcgtcagc
gtaatgtgcaatgaatga
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integrated database retrieval system
