Thermomonas carbonis: H9L16_12505
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Entry
H9L16_12505 CDS
T06786
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tcn
Thermomonas carbonis
Pathway
tcn03030
DNA replication
tcn03410
Base excision repair
tcn03420
Nucleotide excision repair
tcn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tcn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H9L16_12505 (ligA)
03410 Base excision repair
H9L16_12505 (ligA)
03420 Nucleotide excision repair
H9L16_12505 (ligA)
03430 Mismatch repair
H9L16_12505 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tcn03032
]
H9L16_12505 (ligA)
03400 DNA repair and recombination proteins [BR:
tcn03400
]
H9L16_12505 (ligA)
Enzymes [BR:
tcn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H9L16_12505 (ligA)
DNA replication proteins [BR:
tcn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H9L16_12505 (ligA)
DNA repair and recombination proteins [BR:
tcn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H9L16_12505 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H9L16_12505 (ligA)
MMR (mismatch excision repair)
DNA ligase
H9L16_12505 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H9L16_12505 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QNN69487
UniProt:
A0A7G9SNR2
LinkDB
All DBs
Position
2665748..2668084
Genome browser
AA seq
778 aa
AA seq
DB search
MDTATRIAELRLRIEDANRRYHGLDAPHITDAHYDALVRELEALERAHPELASTDSPTRK
VGAAPSGRFAEVVHAVPMLSLGNAFEEGEVADFVRRIRERLDRDELAFSAEPKLDGLAIS
LRYENGVFVQGATRGDGATGENVTANLRTISVIPETLEGEGWPKVLEVRGEVYMARADFE
RWNEHARLHGGKVLANPRNGAAGSLRQIDSTLTAKRPLSFFAYGIGQVEGGTLPATHSAT
LAKLRDWGFPVSDLATVVEGVDGLLDYYRRIGDARDGLPFDIDGVVYKLDDIAGQREMGF
VSRAPRWAIAHKFPAQEQATVLESIEVNVGRTGAVTPWALMQPVQVGGVTVTRATLHNAD
HVARLDVRNGDTVIVRRAGDVIPEVVQVVLGQRPPGTQPWSMPTVCPVCGSEVVREEGAA
VWRCSGELSCPAQRVQAVFHFASRRAMDIDGLGERYIESLAEFGQLQDVSDLYRLTLDDL
LAMKRDADQRDGVTPDTVKAGKIATKWADNLIAAIDRSRDTTLARFLYALGIEHVGESTA
KALAQWFGDLVLIRRLPWPLFKRVPDIGGEVARAIGHFLDQPGNQQVIDRLLERGVRIGD
AHAPNPKLGEGLDLATLLVDLEIPKVTPVRAAQLATAFADVEALIDAPAYSMVAAGLPND
SANALVAWLEVEANAGLLLRSAQAMATLRGLLPERSEQVAGPLDGKTVVLTGTLVAMGRD
EAKEKLEALGAKTAGSVSKKTSFVVAGTEAGSKLAKAEELGIEVWDEAALLAFLARHA
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atggacaccgccacccgcatcgccgaactccgcctccgcatcgaggacgccaaccggcgc
taccacgggctggacgcacctcacatcaccgatgcgcactacgacgcactggtgcgcgaa
ctcgaggcgctggaacgcgcgcatccggaacttgccagtaccgattcgccgacccgcaag
gtcggcgctgcaccgtccggccgtttcgccgaagtcgtgcacgcggtgccgatgctgtcg
ctgggcaatgccttcgaagagggggaagtcgccgacttcgtgcggcgcatccgcgaacgg
ctggatcgcgacgagctggcgttttccgcagaaccaaaactcgacggcctggcgatcagc
ctgcgctacgagaatggtgtgttcgtgcagggcgcgacccgcggcgacggcgccaccggc
gagaacgtgaccgcgaacctgcgcacgatttccgtcatcccggagacgctggagggcgaa
ggttggccgaaggtgctggaagtgcgcggcgaggtctacatggcccgcgccgacttcgaa
cgctggaacgaacacgcacgcctgcatggcggcaaggtgctggccaacccgcgcaacggt
gccgccggctccctgcggcagatcgactcgacgctcaccgccaagcgcccgctgagtttc
ttcgcctacggcatcggccaggtcgagggcggtacgttgccggccacgcattccgcgaca
ttggccaagctgcgcgactggggttttccggtcagcgaccttgcgacggtggtggagggc
gtcgatggcttgctggattactaccgccgcatcggcgacgcgcgagatggcttgccgttc
gacatcgacggtgtggtctacaagctcgacgacatcgccggccagcgcgagatgggcttc
gtctcgcgcgcgccgcgctgggcgatcgcccacaagttcccggcgcaggaacaggccacg
gtgctggaatcgatcgaggtcaatgtcggtcgcaccggtgcggtcacgccgtgggcgctg
atgcagccggtgcaggtgggcggcgtcaccgtcacccgcgccaccctgcacaacgccgac
cacgtggcccggctcgacgtgcgcaacggcgacaccgtgatcgtgcgccgcgccggcgac
gtgatcccggaagtggtccaggtcgtgctggggcaacgcccgcccggcacacagccgtgg
tcgatgccgacggtctgtccggtctgcggttccgaggtggtgcgcgaggaaggcgcggcg
gtctggcgttgttcgggcgagttgagttgcccggcgcaacgggtgcaggcggtgttccac
ttcgcctcgcggcgggcgatggacatcgatggcctcggcgagcgctacatcgagtcgctg
gccgagttcggccaactgcaggacgtgtccgatctctatcggctcacgctggatgatctg
ctggcgatgaagcgcgatgcggatcagcgcgacggtgtcacgcccgatacggtcaaggcc
ggcaaaatcgcaacgaaatgggccgacaacctgatcgccgcgatcgatcgcagccgcgac
accacgctggcgcgcttcctctacgcgctcggcatcgaacatgtcggcgagagcacggcg
aaggcgctggcgcagtggttcggcgacctcgtattgatccgccgcctgccatggccgctg
ttcaagcgggtgccggatatcggtggcgaggtggcgcgggcgatcggccacttcctcgat
cagccgggcaaccagcaggtgatcgatcgcctgctcgagcgcggcgtgcgcatcggcgac
gcgcacgcgccgaatccgaagctcggtgaaggactcgacctggcgacgctgctggtcgat
ctcgaaattccgaaggtcaccccggtgcgcgccgcgcaactcgcgacggcatttgccgat
gtcgaagcgttgatcgatgcacccgcttactccatggtcgctgcgggtttgcccaacgat
agtgcgaacgcgttggttgcttggctcgaagtcgaggcgaacgccgggttgctgcttcgc
agtgcgcaagcaatggcgacgctgcgcggtttgttgcccgagcgcagcgagcaggtcgcc
ggcccgctcgacggcaagaccgtggtgctgaccggtacgctggtcgcgatgggccgtgac
gaagccaaggaaaaactggaagcgctgggcgcgaaaacagccggcagcgtgtcgaagaaa
accagtttcgtggttgccggcacggaagcgggctcgaagcttgccaaggccgaggaactc
ggcatcgaagtctgggacgaagccgcgttgctcgcattcctggcgcggcacgcatga
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