Thermaerobacter composti: Q5761_01265
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Entry
Q5761_01265 CDS
T09555
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tcp
Thermaerobacter composti
Pathway
tcp03030
DNA replication
tcp03410
Base excision repair
tcp03420
Nucleotide excision repair
tcp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Q5761_01265 (ligA)
03410 Base excision repair
Q5761_01265 (ligA)
03420 Nucleotide excision repair
Q5761_01265 (ligA)
03430 Mismatch repair
Q5761_01265 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tcp03032
]
Q5761_01265 (ligA)
03400 DNA repair and recombination proteins [BR:
tcp03400
]
Q5761_01265 (ligA)
Enzymes [BR:
tcp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Q5761_01265 (ligA)
DNA replication proteins [BR:
tcp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Q5761_01265 (ligA)
DNA repair and recombination proteins [BR:
tcp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Q5761_01265 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Q5761_01265 (ligA)
MMR (mismatch excision repair)
DNA ligase
Q5761_01265 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Q5761_01265 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
YiiM_3-alpha
BRCT_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
WPD19331
UniProt:
A0ABZ0QPB6
LinkDB
All DBs
Position
301962..304307
Genome browser
AA seq
781 aa
AA seq
DB search
MDVDEHRSNGGSGGSGKGAGDAARGEALAAARARAEELREQIRHHDYLYYVLDRPAIDDA
AYDALMRELRELEARFPEIVTPDSPTQRVGGRPAAPFARVEHAEPMLSLDNAFGREELEA
FDERVRRAVGDAVAYVAELKIDGLSVALTYEEGRFVRGATRGDGEAGEDVTANLRTIRSL
PLRLRDRERPVPRRVEIRGEVYMTFDAFRRLNQEQEARGLPPFANPRNAAAGSVRQLDPA
VTASRSLNLWVYGLAGWEGDRAVAPRSQWEVLQALRQWGLPVNPHARRCTSLAELLAFIE
EWSRRRHELPYLIDGIVIKVDDLAQQRRLGATARSPRWAIAYKFPAERARTRVRDIQVSV
GRTGALTPVAVLDPVLLAGTTVSRASLHNADYIREKDVRIGDLVVVHKAGEIIPEVVEVV
KEARTGAERPFTMPERCPACGSPVVRVGGEAATRCPNAACPAQQLERIRHFASRDAMDIE
GLGPAIIEQLVARGLVRDVADLYHLEAEPVAQLERMGPKSAANLIAAIDASRARPLRRLL
YGLGIRFVGERVAGVLARHFGTIHRLMGAGPDELMAVPEIGPRIAESVVAFFRDEHNRDL
IRRLAEAGVRAAAGEPEPGSAAAQAAAAAARAGGGGPAGGTGAGGVPAAAAAGHGPGPGA
GEAAFVPASAAGAGGQGRDGLEAQATGAPSGAAVPEVPPAVRARVAGKTFVFTGGLESMT
RDEAEALVEALGGRATSSVSRKTDYVVAGEGAGSKLRRARELGIPVLDEQAFLRLVGRAP
S
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atggacgtggacgagcaccggtccaacggcggaagcggcgggtccggcaagggcgcgggc
gatgccgcccggggggaggccctggcggccgcccgggcgcgggccgaggaactgcgggag
cagatccgccaccacgactacctctactacgtgctcgaccggcccgcgatcgacgatgcg
gcctacgatgccctgatgcgggagctccgggagctggaggcgcggttcccggagatcgtc
acacccgactccccgacccaacgggtcggcgggcggcccgccgcacccttcgcccgggtc
gagcatgccgagcccatgctcagcctggacaacgccttcggccgcgaggagctggaggcc
ttcgacgagcgggtgcggcgggcggtgggcgatgccgtcgcctacgtggccgagctgaag
atcgacgggctctccgtcgccctcacctacgaggagggccggttcgtccgcggggcgacc
cgtggcgacggcgaggccggcgaggacgtgacggccaacctgcgcaccatccgcagcctg
cccctgcgcctgcgcgatcgcgagcggccggtgccgcggcgggtcgagatccgcggcgag
gtgtacatgaccttcgacgccttccgccggctcaaccaggagcaggaggcgcggggcctg
ccccccttcgccaacccgcgcaacgccgccgcgggctccgtccgccagctggatccggcg
gtcaccgcctcccgctccctgaacctgtgggtctacgggctggcggggtgggagggcgac
cgcgcggtcgcgccgcgcagccagtgggaggtgctccaggccctgcggcagtggggcctg
cccgtcaatccccacgcccgccgctgcaccagcctggcggagctgctggcgttcatcgag
gagtggtcccggcggcgccacgagctgccctatctgatcgacggcatcgtgatcaaggtg
gacgacctggcgcagcagcggcggctgggcgccaccgcccgcagcccgcgttgggccatc
gcctacaagttcccggcggagcgggcgcggacgcgggtgcgggacatccaggtcagcgtc
ggccgcaccggcgccctgaccccggtggcggtgctggatccggtgctgctggcggggacc
accgtcagccgcgccagcctgcacaacgcggactacatccgggagaaggacgtgcgcatc
ggcgacctggtggtggtccacaaggcgggggagatcatccccgaggtggtggaggtggtc
aaggaggcccgcaccggggccgagcggcccttcaccatgcccgagcgctgccccgcctgc
ggcagcccggtggtgcgggtggggggcgaggcggccacccggtgccccaatgccgcctgc
cctgcccagcagctggagcgcatccgccacttcgcctcccgggacgccatggacatcgag
ggactggggccggcgatcatcgagcagctggtggcgcgaggcctggtgcgggacgtggcg
gacctgtaccatctggaggcggagcccgtcgcccagctcgagcgcatggggcccaagtcc
gcggccaacctgatcgccgccatcgacgcctcgcgggcgcggcccctgcgccgcctgctc
tacggtctcgggatccgcttcgtcggcgagcgggtggcgggcgtgctggcccggcacttc
ggcaccatccaccggctgatgggggccgggccggacgagctgatggccgtccccgagatc
ggcccgcgcatcgccgagagcgtggtcgccttcttccgcgatgagcacaaccgcgacctg
atccgccgcctcgccgaggcgggggtgcgggcggcggcgggcgagcccgagccgggcagc
gcggccgcccaggcggcagccgccgcggccagggcgggcggcggcggcccggccggcggc
acgggggcgggcggcgtcccggcggcagccgccgccgggcatggcccgggcccgggcgca
ggggaggccgcgttcgtcccggcctcggcggccggcgcgggcgggcagggccgcgacggc
ctggaggcacaggcgacgggtgccccgtcaggggccgccgtccccgaggtgccgcccgcg
gtgcgggcgcgggtggccggcaagaccttcgtcttcaccgggggcctggagagcatgacc
cgcgacgaggccgaggcgctggtggaggcgctgggcggccgggcgaccagcagcgtcagc
cgcaagacggactacgtggtggcgggggagggggccggctccaagttgcgccgggcccgc
gagctcggcatccccgtcctggacgaacaggcgttcttgcggctggtcggccgcgccccc
tcgtga
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