Pseudoduganella chitinolytica: PX653_05120
Help
Entry
PX653_05120 CDS
T08857
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tct
Pseudoduganella chitinolytica
Pathway
tct03030
DNA replication
tct03410
Base excision repair
tct03420
Nucleotide excision repair
tct03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tct00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PX653_05120 (ligA)
03410 Base excision repair
PX653_05120 (ligA)
03420 Nucleotide excision repair
PX653_05120 (ligA)
03430 Mismatch repair
PX653_05120 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tct03032
]
PX653_05120 (ligA)
03400 DNA repair and recombination proteins [BR:
tct03400
]
PX653_05120 (ligA)
Enzymes [BR:
tct01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PX653_05120 (ligA)
DNA replication proteins [BR:
tct03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PX653_05120 (ligA)
DNA repair and recombination proteins [BR:
tct03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PX653_05120 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PX653_05120 (ligA)
MMR (mismatch excision repair)
DNA ligase
PX653_05120 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PX653_05120 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Nlig-Ia
DUF6688_C
Motif
Other DBs
NCBI-ProteinID:
WEF34154
UniProt:
A0ABY8BE08
LinkDB
All DBs
Position
1156038..1158371
Genome browser
AA seq
777 aa
AA seq
DB search
MSKQTPAERAAWLTAELNRHLYAYHVLDAPTIPDAEYDKLFIELQQLEAAHPDLVAPDSP
TVRVGAPPLGQFEPVTHAVPMLSLNNGFTEEDIDNFDRRVREGLDAIEVDYAAEVKFDGL
AINLRYENGVFVQAATRGDGYTGEDVSANIRTIRTIPLRLHGANLPAVLEVRGEVLMFKA
DFHAMNERQRAAGQKEFVNPRNAAAGALRQLDSRITAERKLRFFAYGIGELVGAEMPATH
GALLDWYEQLGLPVAKERAVVRGKDGLLDFYTRIGQARPAMPYEIDGVVYKANRLADQRA
LGFVSRAPRFALAHKFPAEEALTTVQAIEVQVGRTGAITPVARLVPVFVGGVTVTNATLH
NEDEVRRKDVRVGDTVIVRRAGDVIPEVLAVVLERRPVPAPAAYVLPTLCPVCGSHVVRE
EGEAVARCSGGLTCAAQRKEAIRHFAGRRMMDIEGLGDRYIDSLVECSLVHSVADLYKLT
LDDLLQMKRMADEREGTTPDTVKQGKVATKWADNLLQAIEASKRPPLERLLFALGIRHVG
ESTAKTLADWLGRFDLVRQAPEALLRVLPDIGGTVAESIADFFAEEKNQQAIDALLAAGV
APQGEHAPKAQLREKLDPVKLLAALAIPKLTEPRARQLMEQGVTFESLASRRTFDVYGLP
ATVAGALEEWMARPEHRDALLRLDKLRAELLAQLPEAAAAEGPMSGKTFVLTGTLPTLSR
DAAGAMIEAAGGKVSGSVSKKTSYVVAGAEAGSKLAKAEELGVDILDEAGLLALLGK
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcagacccccgccgagcgcgcggcctggctgacggcggaactgaaccgccac
ctgtacgcctaccacgtgctggacgcgccgacgattccggatgccgagtacgacaagctg
ttcatcgaactccagcagctggaggcggcgcatcccgacctggtggcgccggattcgccg
acggtgcgcgtgggcgcgccgccgctgggccagttcgagcccgtcacgcacgccgtgccc
atgctgtccctgaacaacggcttcacggaagaggacatcgacaacttcgaccgccgcgtg
cgcgagggactcgatgcgatcgaagtggactacgcggccgaagtgaagttcgacgggctg
gcgatcaacctgcgctacgaaaacggcgtgttcgtgcaggcggccacgcgcggcgacggc
tacacgggcgaggatgtgtcggccaatatccgcaccatccgcacgatcccgctgcgcctg
cacggcgcgaacctgccggcggtgctggaagtgcgcggcgaagtgctgatgttcaaggcc
gacttccatgccatgaacgagcgccagcgcgccgccgggcagaaggaattcgtcaatccc
cgcaacgccgcggccggcgcattgcgccagctggactcgcgcatcacggccgagcgcaag
ctgcgcttcttcgcctacggcatcggcgaactggtgggggcggagatgccggccacgcac
ggcgcgctgctggactggtacgagcaactgggcctgccggtggcaaaggaacgcgccgtc
gtgcgcggcaaggacggcctgctggacttctatacgcgcatcggccaggcgcgccccgcg
atgccgtacgaaatcgacggcgtggtgtacaaggccaaccgcctggcggaccagcgcgcg
ctgggcttcgtgtcgcgcgctccgcgcttcgcgctggcccataaattcccggccgaggaa
gccctgacgaccgtgcaggccatcgaggtgcaggtgggccgcaccggtgcgatcacgccg
gtggcccggctggtgcccgtgttcgtgggcggcgtcaccgtcaccaacgcgacgttgcac
aacgaggacgaagtgcgccgcaaggacgtgcgcgtgggcgacaccgtgatcgtacggcgc
gccggcgacgtcatccccgaagtgctggccgtggtgctggagcggcgcccggtgccggcg
ccggcagcgtacgtgctgccgacgctgtgcccggtgtgcggttcgcacgtggtgcgcgag
gaaggcgaggccgtggcgcgctgctccggcggcctgacgtgcgcggcgcagcgcaaggaa
gccatccgccacttcgccggccgccgcatgatggacatcgaaggcctgggcgatcgctac
atcgacagcctggtcgaatgcagcctggtgcacagcgtggccgacctgtacaagctgacg
ctggacgacctgctgcagatgaagcgcatggccgacgagcgcgaaggcaccacgcccgat
acggtcaagcagggcaaggtggcgaccaagtgggccgacaacctgctgcaggcgatcgag
gccagcaagcgcccgccgctggagcggctgctgttcgcgctgggcatccgccacgtgggc
gaatcgacggccaagacgctggccgactggctgggccgtttcgacctggtgcgccaggca
cccgaggcactgctgcgcgtactgccggacatcggcggcaccgtggctgaatcgatcgcc
gacttcttcgcggaagagaagaaccagcaggccatcgatgcactgctggcggccggcgtg
gcgccgcaaggcgagcatgcgcccaaggcccagctgcgcgagaagctggaccccgtcaag
ctgctggcggcgctggccatcccgaaactgacggagccgcgcgcgcgccagctgatggag
cagggcgtcacgttcgaatcgctggcgagccgccgcaccttcgacgtctatggcctgcct
gcgaccgtggcaggcgcgctggaagaatggatggcgcggcccgagcaccgcgatgcgctg
ctgcgcctggacaagctgcgcgcggaactgctggcccagctgcccgaagccgcggcggcg
gaagggccgatgagcggcaagacgttcgtcctgacgggcactttgccgacgctgagccgc
gacgcggccggcgccatgatcgaggcggccggcggcaaggtatccggctccgtgtcgaag
aagacgtcgtacgtcgtcgccggtgccgaggcgggcagcaagctggccaaggcggaagag
ctgggcgtggacatcctggacgaggcaggcctgctggcactgctgggcaaatag
DBGET
integrated database retrieval system
