Thiomicrospira cyclica: Thicy_0732
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Entry
Thicy_0732 CDS
T01517
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tcy
Thiomicrospira cyclica
Pathway
tcy03030
DNA replication
tcy03410
Base excision repair
tcy03420
Nucleotide excision repair
tcy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tcy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Thicy_0732
03410 Base excision repair
Thicy_0732
03420 Nucleotide excision repair
Thicy_0732
03430 Mismatch repair
Thicy_0732
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tcy03032
]
Thicy_0732
03400 DNA repair and recombination proteins [BR:
tcy03400
]
Thicy_0732
Enzymes [BR:
tcy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Thicy_0732
DNA replication proteins [BR:
tcy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Thicy_0732
DNA repair and recombination proteins [BR:
tcy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Thicy_0732
NER (nucleotide excision repair)
GGR (global genome repair) factors
Thicy_0732
MMR (mismatch excision repair)
DNA ligase
Thicy_0732
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Thicy_0732
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
5_3_exonuc
RPA_interact_C
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AEG31504
UniProt:
F6DCB8
LinkDB
All DBs
Position
884952..887075
Genome browser
AA seq
707 aa
AA seq
DB search
MKDAVAALNHQDYLKLCAEISQHNQAYYHDDQPIISDAQYDLIYQQLLALEALHPDWVTS
ESPTQQVGFHANQAFRPVKHSLPMLSLDNSFDDQDLAAFYQRALDRLLQLQHPSIISDVS
QLSHALNFFAEPKLDGLALSLRYESGRLVTAATRGDGETGEDVTHNARTIAAIPKRLQGD
HWPALLEVRGEVFMTKSALAQLNEQQAAKGDKPFANPRNAAAGSLRQLDPKVTAQRQLDF
YCYGWGEISPSFDLPTHYAGVMSLLAQWGFPVNPLGRTVIGLDAMITYYTELAEQRADLG
YEIDGIVYKLADLSAQATLGFTAKFPRWAIARKFPAQEVWTDLLGIDIQVGRTGALTPVA
RLTPVAVGGVIVANATLHNLDEIRRKDIRIGDKVIVRRAGDVIPEVVGPLVDQRPSNVRT
FEMPPTCPVCESAVFKDPDKAVYRCSGGLYCPAQQQRALEHFVSRKAMDIQGLGGKVISQ
LIAAKLVAHPDDFYQLSLDELLKLERMAEKSAQNLLDAIAASKQTTLARFIFALGIPEVG
EVTAKNLARNFGELDGLLAADADQLLAIPDVGPVVAQQIERFFAQTHNREVIAGLLNAGI
QWPPLQGQPPTNSTEQTAETQPQKETLFTNKTLVITGSFVGQSRTDLAALLEQMGAKVTS
SVSKNTDFLIAGDKAGSKLTKAIALDVPVITADELTRILGAADGSTP
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatgctgtcgctgctttaaaccatcaagactacctgaaactttgtgctgaaatt
agccagcacaatcaggcttactaccatgatgatcaaccaatcattagtgacgctcagtac
gatttaatctatcagcagcttttagcgttagaagctcttcatcctgattgggtaaccagt
gaatcgcccacgcaacaggtcgggtttcatgccaaccaagcctttagacccgtcaaacat
agtctaccgatgttgtctttagacaatagttttgatgatcaggatctagcggctttttat
cagcgcgcattagaccgtttgttgcaattgcaacacccatctatcatatcggatgttagt
cagttatcccatgctctcaatttttttgcagaaccaaagctggatggcttagctttaagt
ttacgttatgaatccgggcgtttggttactgcggctactcgcggcgatggtgaaaccgga
gaagatgtcactcataatgctcgcacgattgctgcgattcctaaaaggttacagggtgac
cattggcctgcgctgttagaggtgcgcggtgaagtttttatgacgaagtccgccttagcc
cagctcaatgaacaacaggcggcaaaaggtgataaaccttttgcgaatcctcgcaatgcc
gctgccggaagtttgcgtcagctagaccctaaagttacagcacaacgtcaacttgatttt
tattgctatggctggggagagattagtccgtcttttgatctgccaacacactatgccggt
gttatgtcgttattagcccagtgggggtttccagtaaatccgcttggtcggacggttatt
ggcctagatgcgatgataacctactataccgagttggctgaacagcgtgctgatctcggc
tatgaaattgatggtattgtttataaattagccgatttatcggcacaggcgaccttggga
tttaccgccaaatttccgcgctgggccattgcgcgtaagtttccagctcaggaggtttgg
actgatttattgggtattgatattcaagtggggcgtaccggcgcattaacccccgttgct
cgcctaacgccagttgccgtcggtggtgttattgttgctaatgccaccttgcataatttg
gatgaaattcgtcgcaaggatatccgtataggtgataaggtgattgttcgacgtgctggt
gatgtcattccagaagtggtcggacctttagtggatcaacgacctagtaatgtccgcaca
ttcgagatgccaccaacttgtccggtttgtgagtctgccgtctttaaggaccccgataaa
gccgtttatcgttgtagtggcggattatattgtcccgcccagcagcaacgggccttagag
cactttgtatcgcgcaaagccatggatatacagggtttaggcggcaaggtgatcagtcaa
ctaattgcggctaaattagtggcacatccggatgatttttatcagcttagtcttgatgaa
ttactcaaactggagcgcatggctgaaaaatcagcgcagaatcttctagatgcgattgcg
gcctcaaaacaaacaactttagcccgatttatttttgcgctaggtattcccgaagttggc
gaagtgactgccaaaaacttggctagaaactttggtgaacttgacgggctgttagctgcg
gatgctgaccagttgctagccattcccgatgtggggccggttgttgcccaacaaatagaa
cgattttttgcgcaaactcacaatcgcgaggtgattgccggcttattaaacgcgggtatt
caatggccgcctcttcaagggcagccgccaactaatagcacggaacagacagctgagacc
caaccgcaaaaggaaactctttttactaataagacgctcgttattaccggcagttttgtt
ggccagtcacgaacggatttagctgcgttgctggagcagatgggggccaaagtgaccagt
agtgtctcaaaaaataccgattttttaattgccggcgacaaagccggttctaaactaacc
aaggctattgcactggatgtgccagtgataaccgccgatgaattaacgcgcattttagga
gcagcagatggttcgaccccgtaa
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