Triticum dicoccoides (wild emmer wheat): 119280969
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Entry
119280969 CDS
T07278
Name
(RefSeq) sm-like protein LSM3A
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03018
RNA degradation
tdc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119280969
09123 Folding, sorting and degradation
03018 RNA degradation
119280969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119280969
03041 Spliceosome [BR:
tdc03041
]
119280969
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119280969
mRNA degradation factors
5'-3' decay
Lsm complex
119280969
Spliceosome [BR:
tdc03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
119280969
Complex C
U2 snRNP components
119280969
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
TIG_SUH
Glutaredoxin
Motif
Other DBs
NCBI-GeneID:
119280969
NCBI-ProteinID:
XP_037417536
LinkDB
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Position
1A:480780814..480783297
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AA seq
97 aa
AA seq
DB search
MASEEDVAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTSIE
IDDETYEEIVRTSKRTIPYLFVRGDGVILVSPPLRTV
NT seq
294 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggaggaggatgtggcggtgaaggagccgctggatctcatacggctcagcctc
gacgagcgcatctacgtcaagctccgctccgaccgcgagctccgcggcaagctccatgct
tacgatcaacatctcaatatgatacttggagatgtagaagagatagtgacttccattgaa
attgatgatgagacttacgaggagattgttcgtaccagcaagcgcaccatcccctacctt
tttgtccgaggagatggcgtgatactggtttcgccgcccttgcggaccgtctga
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