Triticum dicoccoides (wild emmer wheat): 119303510
Help
Entry
119303510 CDS
T07278
Name
(RefSeq) 5'-3' exoribonuclease 4-like
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
119303510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119303510
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
119303510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Frigida
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
119303510
NCBI-ProteinID:
XP_037436541
LinkDB
All DBs
Position
5A:624346253..624361154
Genome browser
AA seq
1320 aa
AA seq
DB search
MGVPAFYRWLADRYPQTVSDAEEEEPVELEPGAFVPVDPRRPNPNGLEFDNLYLDMNGII
HPCFHPEGRPSPTTYDEVFKSIFDYIDHLFCLVRPRKILYMAIDGVAPRAKMNQQRSRRF
RAAKDAADAAAEEERLRLEFEAEGRNLVRKEKSEAIDSNVITPGTPFMFVLSSALQYYIQ
LRLNHSPGWQSVKVILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHVLYGLDADLIML
ALATHEVHFSILREVITMPGQHEKCFLCGQVGHLAAECQGPGPADNVVELPPIHKKKYQF
LNIWVLREYLEKDLEIVDPPFKINLERILDDFVFLCFFVGNDFLPHMPTLEIREGAINLL
MNIYRAEFKPMGGYLTDGGEVLLERVEHFIQAVAIHEEQIFRKRARIQKAYENNEDRRRA
QGENSEENQYVDMVKLGEPGYRERYYAEKFREEAESKPIDQVQRDVVQKYAEGLCWVMRY
YYQGVCSWQWFYPYHYAPFASDLKNLTEFEITFFLGQPFKPFDQLMGTLPAASSNALPKH
YGDLMTDPNSPLNYFYPKDFEIDMNGKRFAWQGIAKLPFIDERRLLAETQKLEDTLTEEE
RFRNTTMFDIIYVRETHPLAAQIAFLYQMYSQQMIADPSYCVPIDPAASGGMNGFLCLSQ
RNWYSISVGSPVKGFNGITNNRVLNATYVNPQYHKHIPEPPEGAIIPPKILKPYDFKPFP
VLWHEDNSRRQTRDRPQVHGALTGSVLGEAAHRLLKNSLQIKSGSSAGLLHVPYGAAPYG
PGNRARPSGPLGYERGFVDNPYHAHMSRSAPNPRPQFFGEAQANRQNVRILERPNNRNND
GGIHSGMSKLTIQDGPRMHQNPRMQSPGYFPNQPYPNRYGGFPPQRPMQNANFAPQRPFQ
NAPFPQQRPVQQRPVQNAVFPQQRPVQNAGFMQQQQQQQPVNGVPPPLPPSTWIGKQPSG
GQAGTPAKQQDPRANRQPKQDNRQPKQDNLRSQHESRQQAAKVFTREDQASVTHHRTSVG
LPPTSALHVATFAVAEKEDKELYKRIVLSFSWRRQMPRLALTLGLEDDMEEIIEELITKG
QQLDAVNFAYEAGLLEKFSPVPLLKSYLEDSKKIYCTSDNVSTSSGQSGVNANKKEQSAL
RAVIKCVEDHKLEAEFPLEDLRKRLEDLEMAKTEKKKAASSCSSGGPASKRIKGSTGGAM
SPSKSGRLSDNTGAPSSPATATSSSTATAFIGSPASHVSYGTGSPYSYDRSAGHALYCGQ
SPLPMREPYAYPPAVPVPNVGLGMPYQAPPMTYPIYPGYNSGLGAYGNAMAPAFHQAYYR
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcgttctacaggtggctggcggaccggtacccccagacggtgtcggac
gcggaggaggaggagcccgtggagctcgagcccggggccttcgtccccgtcgacccgcgc
cgccccaaccccaacggcctcgagttcgacaacctctacctcgacatgaacggcatcatc
cacccctgcttccaccccgagggccggccctccccgaccacctacgacgaggtgttcaag
tcgatttttgactacatcgaccacctcttctgcctcgtccgccccaggaagatcctctac
atggcgatcgacggtgttgcgccgagagccaagatgaatcagcagcggtccaggcggttc
cgggctgcgaaggacgcggctgatgcggcggccgaggaggaaaggctgaggctggaattc
gaggcggaggggaggaatttggtccgaaaggagaagtcggaggcaatcgactcgaatgtc
ataactcccgggacgcccttcatgtttgtactctcttcggcgcttcagtactacatacag
ttgagattgaatcactcccctgggtggcagtctgtcaaggtaatattgtcggactcaaat
gttcctggagagggggaacataagatcatgtcatatatccgtctgcagcgcaatcttcca
gggtttgacccaaacacacgccatgtcttatatggccttgatgctgatttgatcatgctt
gctctggcaactcatgaggtccacttctcaattttaagagaggtgatcaccatgccaggg
caacatgaaaaatgctttctgtgtggtcaagttgggcatttggctgctgagtgccaaggc
cctggtcctgctgataatgtcgtggagctccctccaattcataaaaagaagtaccagttt
cttaacatctgggtgctgcgggaatacctggagaaggatctggagattgtagatcccccc
ttcaagataaaccttgaacgcatcttggatgattttgtgtttctctgcttctttgttggg
aatgactttctgcctcacatgccgactttggaaattcgcgagggtgccattaatcttctg
atgaatatttatagagcagagttcaaaccaatgggcggttacctcactgatgggggtgag
gttttactggaacgagtggagcatttcattcaggctgttgctatccatgaagaacaaatt
ttccggaagcgtgcacgtattcagaaggcgtacgagaacaacgaggatagacgtagagcg
cagggagagaactccgaggaaaatcaatatgtggacatggttaaactaggagagccagga
tacagggagaggtactatgctgagaaatttagagaagaggcagaatcaaagcccattgat
caagttcagagagatgttgttcagaaatatgcggaaggtctttgctgggttatgagatat
tattatcagggtgtttgttcatggcagtggttctatccataccattatgcgccttttgca
tctgacctgaaaaatttgactgagtttgagataacctttttcttgggtcaacctttcaag
ccatttgatcaactaatgggaacactgccagctgctagctctaatgcactgccaaagcac
tacggggatttgatgactgatccaaattcaccgttgaattatttctatcccaaagatttt
gaaatagacatgaatggaaagcgttttgcatggcagggtattgcgaaattgccttttatt
gatgaaaggcggttgcttgcggagacacagaaacttgaagatacattaacagaagaagag
agattcaggaatacgacaatgtttgacataatttatgtgcgggaaactcatccattggct
gctcagattgcattcctgtatcagatgtactctcaacaaatgatagcagatccttcctat
tgtgtccccattgaccctgctgctagtggcggaatgaatggatttctttgtttatctcaa
agaaattggtacagcatctctgtaggatctccagttaagggcttcaatggcatcaccaat
aaccgagttctgaatgctacctatgttaaccctcagtatcacaaacacatcccggagcct
ccagagggtgccattatacctccaaagatattgaaaccttacgatttcaaacctttccct
gtgttgtggcatgaagataatagtcggcgacagacacgagacaggcctcaggtgcatgga
gctctgacaggttctgtcttaggagaggctgcacaccgtctactgaaaaattccctgcag
atcaaatctggcagctctgctgggctgcttcatgttccatacggagcagcaccctatggc
cctggaaacagagcaaggccctctggacctttgggatatgagaggggttttgtggacaac
ccataccatgcacacatgtccagaagcgctccaaatcctcggcctcagttctttggtgaa
gctcaagccaacagacagaatgtgcggatactagagcggccaaacaatcgaaacaatgat
ggtggcatccattcagggatgtcaaaactgacgattcaagatgggccaagaatgcatcaa
aatcccaggatgcagagtcctggatattttccaaaccagccatatccgaatcggtatggt
gggttcccaccccagcggcccatgcagaacgccaattttgcaccgcagcgacctttccaa
aatgcaccattcccacagcagcggcctgttcagcagcggcctgttcaaaatgctgtattc
ccacagcagaggcctgttcaaaatgcaggattcatgcagcagcagcagcagcagcaacca
gtgaacggggttcccccaccactacctcccagcacttggatcggcaagcaaccaagcgga
ggccaggctggtacacctgccaagcagcaggacccaagggcaaatagacagcctaagcag
gataatagacagccaaagcaggataacctgagatcacagcatgagagcagacagcaggct
gccaaggtgttcacacgagaggaccaggccagcgttactcaccaccggacgtcggtggga
cttccgcctaccagtgcgctgcacgtcgccaccttcgccgtggcggagaaggaggacaag
gagctgtacaagaggattgtcctcagcttctcctggcgcaggcagatgccacgccttgct
ctcacgcttggcctcgaggatgacatggaagaaatcattgaagaacttatcacaaagggg
caacaacttgatgccgtgaactttgcctatgaggctggtcttctggaaaaattctcccca
gtccctcttttgaaatcctacctagaggattctaagaagatatattgcacttcagataat
gtgagcaccagcagtggccaatctggggtcaatgcaaacaagaaggagcagtctgcgctt
cgggctgttataaagtgtgttgaggaccacaaactcgaagctgagtttccattggaggat
ctccggaaacggctggaagatttggagatggcaaagactgagaagaaaaaggcagcgtcg
agttgttccagtggcggcccagcaagcaagcgcatcaaagggagcaccgggggagcaatg
tccccttccaagtctggtcgtctaagcgacaacaccggtgcaccatcttcccccgccacc
gccaccagcagcagcaccgccaccgcattcatcggctctccagcctcccatgtctcctac
ggtaccggatctccctactcttatgataggtcagctgggcacgccctctactgtggccag
agcccacttccaatgagggagccatatgcatacccacctgcggtgccggtgcctaatgtt
ggccttggaatgccataccaagcccctcccatgacctaccccatctaccctggatacaac
agcggcctgggagcctatggcaatgccatggccccagcctttcaccaggcttactaccgg
tag
DBGET
integrated database retrieval system
