KEGG   Triticum dicoccoides (wild emmer wheat): 119327314
Entry
119327314         CDS       T07278                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1-like
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
tdc  Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:tdc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    119327314
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tdc03021]
    119327314
Enzymes [BR:tdc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     119327314
Transcription machinery [BR:tdc03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     119327314
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 RNA_pol_Rpb1_1 RNA_pol_Rpb1_7 Zn_ribbon_2
Other DBs
NCBI-GeneID: 119327314
NCBI-ProteinID: XP_037456347
LinkDB
Position
1B:complement(184754709..184766329)
AA seq 1427 aa
MEEPNAEMGMPTGELKGIAFYLMTNTEMEKSSSASIIEPSDVSSAKLGLPNGAPQCETCG
AQTVRECDGHSGVIKLPATVFNPHLFEEVVQLLNQICPGCHTPKQNRDSKRSDGATSQAT
CKYCSKDGTKQYPDVIFKTLKSPRITLSKAKLLRDPDFMDKISLTAEVADSVTGSPEVLP
LDYWDFVPHHHPPQSNMTKILLSPYQASHILEQLDPELFSRFASKPELIFLSCLPVTPNF
HRVAELPYGFSDGPRLAYDDLTKAYKRTVDVGRKLDDFRQHPQFSVLASSLVTSRVVECL
KLSKLHSKKTDKESSTDTHGMKWLKDAILSKRSDNAFRGTMVGDPKIRLHEIGVPVDLAS
NLVVSEHVNSYNFDSINSKCNSYLLANEKLVIKRSGKTIIVRKPNQLVIGDTVHRLLQDG
DLILINRPPSVHQHSLIGLSAKLLPVQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQSR
VELGELVSLSHQLLNAQDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEVQQFQMLLCHPLS
PTPGPAIMKSIHSHGPLWTGKQLFSMLLPSDMSFNIEPKVHIIDGEVLACPSESFWLQNS
ISGLFSVMFKQYGDKALELLSSAQDVLCEFLTMRGLSVSLSDIYLFPDHDSRRKLADGVN
LALDDAEEAFRIKQILLSPDSIPILKCYDDSADLSQSYEQSSFIRSNLPIIKSSIMAFKS
VFSDLQKMVQQHTAKNNSMMMMTNAGSKGSMLKFVQQTACVGLQLPANRFPFRIPSELSC
ASWNRHKSEGTGECLGGQNLYAVIRNSFAGGLNPLECLLHSLSGRANFFSENADVPGTLT
RKLMYHLRDVYVAYDGTVRSSYGQQIMQFTYDTAEDMCSDRNPEGELGAPVGSWAACSIS
EAAYGALDHPVNSLEESPLMNLQDVLKCQKGGTSMDHVGLLFLSKHLKKYRYGLEYASLE
VKDHLEPVNFSDLVDTVMILHGGCGIQSTKGSPWITHFHLSQEMMMKKRLGLRLVVEEIT
EQYNAKRDKLNIPKVYISKGKCSADNECGNRQTCCITVVTQDDSDSMSLLETIKKRVIPN
LLALLVKGFLEFKKVEIQCQEDSELIVKVIMSEEHCKSVKFWATLQKSCIAIMELIDWER
SRPGSVYDIFCSYGIDSAWKYFVESLRSKTDDIGRNIRREHLLVVANCLSVSGQFHGLSS
QGLKQQRTRLSISSPFSEACFSRPAHTFINAAKQSSVDNLCGTVDAMAWGKEPTTGTSGP
FKIIYSGKAHAPIPNENIYDFLNSPEVRQAPGEAFLNGSTISVEQDFLVATVGIWDNIID
MRTCLQNMLREYQLNECVGELDKSRVIEALRFHPRGREKIGAGIKDIKIGHHPSHPGTRC
FIMVRDDGTTEDFSYKKCVQAAADSISPELGRYVERILRNRAVSSQC
NT seq 4284 nt   +upstreamnt  +downstreamnt
atggaggagccaaatgctgaaatgggaatgccaaccggggagctgaaaggcatcgcattc
tatctcatgaccaatacagagatggaaaagtcaagcagcgcgagcattatagaaccatct
gatgtcagcagtgccaagttgggactaccaaatggggcaccacagtgtgagacttgcgga
gcgcagactgtgcgtgaatgtgatggtcattctggtgtgattaagctgccggcaactgtg
ttcaatccgcatctattcgaggaagttgttcagttactgaatcagatatgtcctggctgc
cacactccaaagcagaacagagattcgaagaggtcggatggggcaacaagtcaagcaact
tgcaagtattgctcaaaggatggcactaaacaataccccgatgtaatctttaagacactg
aaaagcccaagaataacactgtccaaggctaaacttctacgggaccctgactttatggac
aaaatttcgcttactgcagaagttgctgacagtgtgactggttcacctgaagttcttccc
ctggactattgggatttcgtacctcatcaccacccccctcaatcaaatatgaccaagata
ttattgtctccataccaagcctctcacatattggaacaacttgatcctgagctatttagc
cggtttgcttcaaagccggagctaattttcctgtcgtgtttgccggtgactcctaacttc
catcgtgtggcggagttgccctatgggttttcagatggccctcgcctagcttatgatgac
ctgacaaaagcttacaagaggacggttgatgtcggtaggaaacttgatgacttccgtcag
catccacagttcagtgttcttgcaagttcacttgtcacaagccgagttgtggagtgcctc
aaattgtcaaagttacactctaaaaagacagataaggaatcatcaacagacacacatgga
atgaaatggttgaaggatgccattctcagcaaacggtccgataatgcttttcggggtact
atggtcggtgatccgaagattagattgcatgaaattggcgtccctgtggatttagcttcg
aacttggttgtttctgagcatgttaactcctacaactttgacagcataaattcgaagtgc
aacagttaccttcttgccaatgaaaaactagtcattaagcgtagtggaaagacaattatt
gttcggaagccaaatcagctggtaattggcgacactgtgcacaggctattgcaggatggt
gatcttattcttatcaacaggccaccgtcagtacatcaacattccctcattggactctct
gcaaaattactcccagttcagtcggtactttcaatcaacccactctgttgtgcaccactc
gcgggagattttgatggggactgtttgcatggatatgtcccacagtccatacagtcaaga
gttgagcttggggagttagttagtttgagccaccaactattgaacgcgcaagatgggcga
agtttggtgtcattaacacatgactctctagctgcagcatatctgttaacaagctcagag
gttttactaaagaaaactgaagttcagcaatttcaaatgttattatgccatccactctcg
ccgacaccagggccagcaataatgaaatctatacactctcatggtccactgtggaccggt
aagcagttgttcagcatgctgcttccgtctgatatgagtttcaacattgagcctaaggta
cacatcatagacggtgaagttcttgcctgcccatctgaatctttttggctgcagaatagc
atatctggccttttttctgtcatgttcaaacaatatggcgacaaggctcttgagttactc
tcttctgctcaggatgtactatgtgagtttttaaccatgagaggtttaagtgtcagtctt
tcggatatctatctgttcccagaccatgactcgaggagaaaactagctgatggagttaat
ctggcattggatgatgctgaagaggcttttcgtattaaacagatattgctaagtccagat
tccataccgattctgaaatgttatgacgactctgctgatttatcacaatcttatgaacag
tccagtttcattcggagcaatctgccaattataaaatcttcaatcatggcgtttaagagt
gtattcagtgatcttcagaagatggttcaacagcacacagccaaaaataattcaatgatg
atgatgactaatgcaggaagtaagggtagcatgttgaagtttgtgcaacaaactgcatgc
gtcggtcttcaacttccagcaaacagattcccctttagaattccgtcggaactctcatgt
gccagctggaataggcataaatctgagggcacgggtgaatgcttgggaggccaaaacttg
tatgctgtgatcaggaattcctttgctggcggtttaaatccattggagtgtcttcttcat
tcgctatctggcagagcaaacttcttcagtgagaatgcagatgttcccgggactttaaca
agaaaactaatgtatcacctgagggatgtatatgttgcttatgatgggactgttagaagt
tcttacgggcagcagataatgcagttcacttatgatactgctgaagacatgtgcagtgat
cgcaatccggaaggtgaacttggtgcccctgttggttcctgggctgcttgttccatttca
gaagctgcatatggagctttggatcacccagtgaacagcttagaggaatctcctctcatg
aatttgcaggatgtattgaagtgccagaagggtggtacttctatggatcatgttggtttg
cttttcctgtcaaagcatctaaaaaaatatagatatggtttggaatatgcatcgttagaa
gttaaggatcatctcgagccagtgaacttctctgatttggttgacaccgtcatgatccta
catgggggatgtggcatacagtcaacaaaaggaagcccatggattactcattttcatcta
agccaggaaatgatgatgaaaaaaagattgggactaagacttgttgtggaagagattaca
gaacaatacaatgccaaaagagacaagttaaacatccctaaagtttatatttcgaagggc
aaatgttctgctgacaatgagtgcggtaacaggcagacttgctgtatcactgtggtaaca
caggatgattcagactctatgtctctattggagactatcaagaaaagggtgattccaaac
ctcctggccttactagtgaaaggatttttggaatttaagaaagttgagatccagtgtcaa
gaggacagtgaacttattgtgaaagttattatgtctgaggagcactgcaagagtgtgaag
ttttgggctactctacaaaagtcttgcatagcaattatggagttgattgactgggagagg
agccggccagggagcgtatatgatattttttgctcatatggcatagactcagcatggaaa
tactttgttgaatccttaagatcaaaaactgatgatattggaaggaatattcgccgcgaa
cacttgctggttgtggcaaattgcctgtctgtaagtgggcagttccatggactaagcagt
caaggtttgaagcaacaacggactcgattatcaatctcatctccattttctgaagcttgt
ttttctaggcctgcacatacttttataaacgctgcaaagcagtcttcagtggacaatctc
tgtggtactgtagatgcaatggcctggggcaaggagcctactactgggacatcaggtcct
ttcaagattatttattctgggaaggcgcatgcaccgataccaaatgagaacatctatgac
ttcctaaatagccctgaagttcggcaagcgccgggtgaagctttcttgaatggtagcacc
atatctgtggagcaagattttcttgttgctacagttggtatatgggacaacattattgat
atgcgcacttgcttgcagaacatgctacgagagtaccaattaaatgaatgtgttggggag
ctagataaatcacgtgtaatcgaggccctgagatttcatcccagagggcgtgaaaagatt
ggtgctggaataaaagatataaagattggccatcatcctagtcacccaggaacaaggtgc
ttcattatggtacgggacgacggtaccactgaggacttttcttacaagaaatgtgtccag
gctgccgcggattctatctcgcctgaactcggacgttatgtagagagaatactacggaac
agagcagtttcgtcacaatgttag

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