Triticum dicoccoides (wild emmer wheat): 119336008
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Entry
119336008 CDS
T07278
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119336008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tdc03041
]
119336008
Spliceosome [BR:
tdc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
119336008
Complex C
U5 SnRNP specific factors
119336008
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
Ras
Septin
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
119336008
NCBI-ProteinID:
XP_037463945
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All DBs
Position
7B:complement(525770552..525776295)
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AA seq
994 aa
AA seq
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MDDSLYDEFGNYIGPELADSDADDSDAAASPSPSQSRSPSPARSPSGSPGSRRPAALMDV
DDDDYADAAQNAVVLAEDKKYYPTAEEVYGPGVEALVMDEDEQALEKPIVAPPRVVKFEV
GTRAGATSTYASTDFILGLASNPLLVRNVALVGHLQHGKTVFMDMLVEQTHEVDTFDSEG
ERHIRFTDTRVDEQERRVSIKAVPMSLVLESGNGKSYLCNIMDTPGHVNFSDEMTAALRL
ADGAVLVVDAAEGVMVNTERAIRHAIQERLPIVVVINKVDRLITELKLPPNDAYFKLRHT
LDTINDLISSCSTTVGGTQLVDPAAGNVCFASGSAGWSFTLQSFAHLYLKIHGIQFDHEK
FASRLWGDLYYDHNSRTFKKKPPAAGANRSFIEFILEPLYKIYSQVVGEQQKILEITLAD
LGVTLSNAAYKLNVRPLLRLACRSIFGTATGFTDMLVKNIPNVKDGAARKIEHIYTGQQD
SSIVDAMKKCDSLGPLMVNVTKLYPKPNCSVFDAFGRVYSGTIQTGQAVRVLGEGYSPDD
EEDMTVKEVTKLWVYQARYRVPISKAPAGSWVLIEGVDASIMKTATICPMNMDEDVYIFR
PLRFNTLPVVKIAAEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLD
SIMKDLRELYSEVEVKVADPVVTFCETVVDTSSMKCFAETPNKRNKITMLAEPLEKGLAE
DIENGLVSLDSRQKEVTDFFRQRYQWDVLAARSIWAFGPDKQGPNILLDDSLSVEVDKNL
LNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKILNANIAPEPLHRGGGQIIPTARRVVYS
AFLMANPRLMEPVYYIEIQTPIDCVSAIYTVLSRRRGHVTADVPKPGTPVYVVKAFLPVI
ESFGFETDLRYHTQGQAFCVSVFDHWAIVPGDPLDKGIVLRPLEPAPIQHLAREFMVKTR
RRKGMSEDVSINKFFDEAMMNELAQQTADIHLMM
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atggatgacagcctctacgacgagttcggcaactacatcggcccggagctcgccgactcc
gacgccgatgactcggacgccgccgcctccccgtccccctcgcagtcccgctccccctcc
ccggcgcgctccccgtccggctcccccggctcccgccgccccgccgccctcatggacgtc
gacgacgacgactacgccgacgccgcccagaacgccgtcgtcctcgccgaggacaagaag
tactaccccaccgccgaggaggtctacggcccgggcgtcgaggcgctcgtcatggacgag
gacgagcaggcgctcgagaagcccatcgtcgcgccgccccgcgtcgtcaagttcgaggtc
ggcacccgcgccggcgcgacctccacctacgcctccaccgatttcatcctcggcctcgcc
tccaacccgctgctggtccgcaatgtggcgctcgtgggccacctgcagcacgggaagacg
gtgttcatggacatgctcgtggagcagacccacgaggtggacacgttcgactccgagggc
gagcgccacatccggttcacagacacccgggtggacgagcaggagcgcagggtctccatc
aaggctgtgcccatgtcactcgtgcttgagtcggggaatggcaagtcctatctctgcaat
atcatggacacgcctgggcatgtcaatttttccgacgagatgactgctgcgctcaggcta
gcggatggggctgtgcttgttgtcgatgctgctgagggcgtcatggtaaacactgagagg
gcgattcgtcatgcaatccaagaaagacttcccatcgttgttgtgattaacaaggttgac
agactgataacagagctaaagctacccccaaatgatgcgtattttaagctacgacataca
ctggacacaatcaatgatctaatctcatcttgttctaccacagtaggtggcactcaactg
gtagaccctgctgctggaaatgtttgctttgcgagtggttctgctggctggtcttttacc
ttgcaatcgtttgcgcatctttatttgaagattcatgggattcagtttgaccatgagaaa
tttgcatctcgtctatggggagatttgtattatgaccataactctagaaccttcaaaaag
aagccgccagcagcaggtgctaataggtcattcattgagttcatccttgagcctctgtat
aaaatctatagtcaggttgttggagagcaacagaaaattcttgaaataactctcgctgac
ttgggtgtgacactgagcaatgcagcttataagcttaatgttaggcctttgctgagactt
gcttgccgctcaatttttggcactgctactggttttactgacatgttagtgaaaaacatc
cccaatgtgaaggatggtgctgcaaggaaaatagaacacatatacactggtcaacaagat
tcctccattgtggatgcaatgaagaaatgtgattcccttggtcctcttatggtcaatgtt
acaaaactgtatcctaagcctaactgtagtgtctttgatgcctttggacgagtttatagt
ggcacaatacagactggtcaggcagttcgggtgcttggagaaggctattcccccgatgat
gaagaggatatgactgtcaaagaggtcaccaagctgtgggtctatcaggcacggtaccgt
gttccaataagtaaggcccctgctggttcttgggttcttattgaaggcgtggatgcatca
atcatgaaaactgcaaccatatgtcctatgaacatggatgaagatgtgtacatatttaga
cctctacgcttcaataccttacctgttgtgaagatagcagctgagcctcttaacccgagt
gagctacctaaaatggtggaaggtctacgtaaaattagcaagagctaccctcttgctatt
actaaggtagaagagtcaggagaacacactatacttgggactggtgagctatatctagat
tctataatgaaggacctcagagagctttactctgaggtagaagtgaaggttgcagatcca
gttgtgacattttgtgaaacagttgttgatacttcctctatgaaatgttttgctgaaaca
cccaacaagaggaacaaaattaccatgttagctgaaccactagagaagggcttggcagaa
gatatagagaatggcctcgttagccttgactcgaggcagaaagaagtcaccgacttcttt
cgccaacgctaccagtgggatgtgcttgcagcaaggtcaatatgggcttttggacctgac
aagcagggtcctaacattctattggatgactctctttcggttgaggtggataagaatttg
ctgaatgcagtcaaagattcaattgttcaagggtttcagtggggggctagagaaggcccc
ttgtgtgatgaaccaattaggaatgtgaagttcaagatcttaaatgcaaatatcgctcca
gaaccattgcaccgtggaggtggccaaataatccccaccgctcgtcgggttgtctactca
gcatttctaatggctaatcctcgactaatggagcctgtttattatattgagatccaaact
ccaattgactgtgtgtctgctatatatacggtcctgtcacggcgacgtggccatgtgaca
gccgatgtacccaagccaggcactccagtatatgttgtcaaggcatttttacctgtcata
gagtcttttgggtttgagacagatctcagataccatacacagggacaagcattttgtgtg
tcagtgtttgaccactgggctattgttcctggtgatcctcttgacaagggcattgttctc
cggcctttggaaccagcacctatccaacaccttgcccgtgagttcatggtaaagaccagg
cgaaggaagggcatgagcgaggatgttagcatcaacaagttctttgacgaggccatgatg
aacgagctggcgcaacagactgcagatatccacctgatgatgtag
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