Triticum dicoccoides (wild emmer wheat): 119356276
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Entry
119356276 CDS
T07278
Name
(RefSeq) putative DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
119356276
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tdc03400
]
119356276
Enzymes [BR:
tdc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
119356276
DNA repair and recombination proteins [BR:
tdc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
119356276
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
DNA_ligase_IV
RNA_ligase
Ribonuclease_3
Motif
Other DBs
NCBI-GeneID:
119356276
NCBI-ProteinID:
XP_037479113
LinkDB
All DBs
Position
2A:688341698..688350825
Genome browser
AA seq
1234 aa
AA seq
DB search
MAATVRFGLLVAMFQAMTRDRTSAKKRGRLRTFLDRAYGASGRDDYFSALRLILPSLDRE
RGSYGLKEAALAAALVEALGIAKDSPDAVRLTNWRRGGGGRNAGNFSLVAAEVLQRRQGM
TSGGLTIKEVNDALDRLSASDTRSEKASVLSSMIKKTNALEMKWLLMIIIKDLKLGISEK
SIFHEFHPDAEDLFNVTCDLKWVCEKLNDRSQRHKRQDIEVGKAVRPQLAMRVGNASSAW
KKLHGKPVVAECKFDGDRIQIHKNGEEIHFFSRTFLDHSEYTSGMSKFIKENILVDRCIL
DGEMLVWDTALNRFAEFGSNQEIAKAASEGLETNRQLCYIAFDILYSGDTSVIHQSLSER
HEILRKVVKPLKGRLEILVPTGGLNTHRPPDEPCWSIFAPNIEDVEKFFKETVENRDEGI
VLKDLDSKWEPGDRTGKWLKLKPDYIHAGADLDVIIIGGYYGSGRRGGEVAQFLVGLAVS
SDDNSHPKRFLSFCRVGTGLSDEELATLVAKLKPHFSGTPKKTPRFYEVTNNSKERPDVW
IESPDKSVILSITSDIRTIKSEVFAAPYCLRFPRIQRVRYDKPWHECLDVQSFVEIVHSS
NGSMHKAEDDKSLKNDNLQNPKINKRGEKKNVSIIPSHLMKTDISGLKGETLIFANTMFY
FVNTPPSYNLDYFHKLVVENGGSFSMNLNDSVTHCIAAEKKGIKYQAAIRHGRIIHYSWI
LDCCKQKILLRLQPKYILFLADFARHKFPEEIDSYADFYYWDIDVSDLKQIFINMDKVTV
DPSMVHRYKKKYYADERFCFFQGCCVYLYHAPLVNEDYNVISDLALKRVKQDLTMHGGQY
CSSLAPATHLVIVSVLEVYNFDILYKSFSPAERRYLHDKRLHVVSNKWLEDSVEKQMKLP
ETAYNLKPDTLEEIQIERSEEKAQPSNDKTAENEEVEISHVKHARKRGRATSSSSRTVRA
APRPVRTTRARRGNKQAKIDDGEPEEDGPGETGQDDEKSNTDPISRMEEDSSDKHQRPPR
AAPRPVRRTSARRGTRQAKIDYRESDESGPGETGEEDQKVGTDAVVKMEEDSLDENQGPP
AGAQFITLDDREPTVVKLSAAEEKTGSPKFESKGTSQRTDAGEGESMAGEKIEQMVDPLH
AMLLDMIPSLREEASSDPPAKVEHDPPRVRSSMSDNRAPVPETGGSASNPVAPAPPAGSS
SYSAGVPAPDPNPAAPKKKKVSYKDLADEFLKDW
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgacggtgcggttcgggctcctggtggcgatgttccaggccatgacgcgggac
cgcacgtccgcgaagaagcggggccgcctccgcacgttcctcgaccgcgcctacggggcc
agcggcagggacgactacttcagcgcgctccgcctcatcctcccgtccctcgaccgcgag
cgcggctcctacggcctcaaggaggccgccctcgccgccgcgctcgtcgaagcgctcgga
atcgccaaggactcccccgacgccgtccgcctcaccaactggcgccgcgggggcggcggc
cgcaacgcgggcaacttctccctcgtcgccgccgaggtgctgcagcggaggcaaggaatg
acttctggtgggttgacaataaaggaggttaatgacgcacttgatcgtctatctgcaagt
gatactaggtctgagaaggcttcggttctttcaagtatgatcaagaaaaccaatgccctt
gaaatgaagtggcttctcatgatcattattaaagacttgaaattggggatcagtgagaag
agcatattccatgaatttcatcctgacgctgaggacttattcaatgtcacttgtgactta
aaatgggtctgtgaaaagcttaatgatcgaagtcaaaggcataaacgtcaggatatagaa
gtcggaaaggctgtgaggcctcagctagctatgagagtcggtaacgcttcatctgcatgg
aagaagcttcatggcaaaccagtggttgctgagtgcaaatttgatggcgatcgtatccaa
attcacaagaatggggaagagattcatttcttctcacggacctttcttgatcattctgaa
tatacatctgggatgtccaaatttattaaggaaaatatcctggttgacaggtgtattttg
gatggggagatgcttgtttgggatactgcgcttaatcggtttgctgaatttggctcaaac
caggaaatagcaaaggctgctagtgaggggctggagacaaatcgacagttgtgctatatt
gcttttgacattctttattctggagacactagtgttatccaccaaagtttgtcggagcgg
cacgaaattctgcggaaggttgtcaaacctttaaagggtcgtcttgagattttggtccca
acaggtggtctaaacacccatcgccccccagatgaaccatgctggtccatttttgctccc
aatattgaagacgttgagaaattcttcaaggagactgtcgaaaacagagatgagggaatt
gtactaaaggaccttgattccaaatgggaacctggtgatcgaactggaaagtggcttaaa
ctaaagcctgattatatacatgctggtgctgatctggatgttattattataggtggatat
tatggatcagggcgtcgaggaggagaggttgcacagtttttagttggtcttgcagtgtct
tcagatgataatagtcaccccaaaagatttctttcattttgtcgagtcggtactggtctc
tccgatgaagaacttgccactctagtcgcgaaactgaagccccactttagtggaaccccc
aaaaaaacacccagattttatgaagtaacaaacaattcgaaggagcggccagatgtttgg
atagaaagccctgataagtcagtcatactatctataacaagtgatattcgaacaattaaa
tccgaggtttttgctgccccatactgcttgaggttcccccgcattcaacgagtgagatat
gataagccatggcacgagtgccttgatgtgcaatcatttgtggagatcgtgcactcaagt
aatgggtcaatgcacaaggcagaagatgataagagtctgaaaaatgacaacttacagaac
ccaaaaataaacaaaaggggggagaagaagaatgtatcaatcatcccttcacatcttatg
aagactgacatatcaggcttaaagggcgaaaccctgatatttgcaaacacgatgttctat
tttgtcaacacccctccgtcatataacctcgactatttccataaactggttgtggagaat
ggaggatctttctcgatgaatcttaatgactctgttactcactgcatagcagcggagaag
aaaggtatcaaatatcaggcggccatacgccacggaaggatcattcattattcctggatc
ttggactgttgcaagcaaaaaatacttcttcgtttgcaacccaagtatatcctctttctt
gcagattttgccaggcacaaatttcctgaagagatcgactcgtatgcagatttttactac
tgggacatcgatgtttctgacctgaagcagatattcatcaacatggacaaagttactgtc
gatccaagcatggtacaccggtacaaaaagaagtattatgcagatgaaagattctgcttc
ttccagggttgctgcgtttacttgtatcatgcacctttagtgaacgaggactacaatgta
atatctgatcttgcactaaagagggtgaagcaggaccttacaatgcatggtggtcagtat
tgcagcagccttgctcctgctacccatttggttatagtttcagttcttgaggtgtacaat
tttgacatattgtacaagagcttctctccagctgagaggcgttacctacacgacaaaaga
ttgcatgttgtcagtaacaagtggttagaagattcagtggagaaacaaatgaaattgcct
gaaaccgcctacaaccttaaaccggatacattagaagaaatacaaatcgaaaggagtgag
gaaaaggcccagccctctaatgacaagactgctgaaaatgaggaggttgaaatatctcat
gttaaacatgcaaggaaaaggggcagggcgacaagcagtagttcgagaactgtacgggct
gctcctaggccagtccgaacaacaagggctagaagaggaaataagcaggcaaaaatagat
gatggtgaacctgaagaagacggtcctggtgaaacaggtcaagatgatgaaaagtcgaac
acagatcccatctccaggatggaagaagatagcagtgacaagcaccaacgaccacctcga
gctgctcctagaccagttcgaagaacaagtgctagaagaggaacccggcaagcgaaaata
gactatcgtgaatctgacgaaagcggccctggtgaaacaggtgaagaagatcaaaaggtt
ggcacagatgctgtcgtaaagatggaagaagatagcctggatgaaaaccaaggaccgcct
gcaggggcccagttcatcacattggacgatcgagagcccacagtcgtcaaactgagtgcc
gcagaggagaagacaggcagtccaaagttcgaaagcaaaggaacttcccaaagaacagac
gctggtgaaggagagagcatggcaggtgagaagatagaacagatggttgatcctctgcac
gcgatgctcctcgacatgataccgtcgcttagggaagaagcgagcagcgatcccccagcc
aaagtcgagcatgatccgccgcgtgtgagaagttccatgtcggataacagggctccggtg
cctgagacaggtggttctgcatccaatcccgtggctccggcaccgccggcaggaagttcg
tcatacagtgcgggggttccagccccagatccaaatcccgcggctcccaagaagaaaaag
gtgagctacaaagatctggccgacgagtttctgaaagattggtga
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integrated database retrieval system
