Tessaracoccus defluvii: H9L22_07990
Help
Entry
H9L22_07990 CDS
T06774
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tdf
Tessaracoccus defluvii
Pathway
tdf03030
DNA replication
tdf03410
Base excision repair
tdf03420
Nucleotide excision repair
tdf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tdf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H9L22_07990 (ligA)
03410 Base excision repair
H9L22_07990 (ligA)
03420 Nucleotide excision repair
H9L22_07990 (ligA)
03430 Mismatch repair
H9L22_07990 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tdf03032
]
H9L22_07990 (ligA)
03400 DNA repair and recombination proteins [BR:
tdf03400
]
H9L22_07990 (ligA)
Enzymes [BR:
tdf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H9L22_07990 (ligA)
DNA replication proteins [BR:
tdf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H9L22_07990 (ligA)
DNA repair and recombination proteins [BR:
tdf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H9L22_07990 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H9L22_07990 (ligA)
MMR (mismatch excision repair)
DNA ligase
H9L22_07990 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H9L22_07990 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
DUF7575
Motif
Other DBs
NCBI-ProteinID:
QNP57191
UniProt:
A0A7H0H9H5
LinkDB
All DBs
Position
complement(1656384..1658486)
Genome browser
AA seq
700 aa
AA seq
DB search
MSEEPRVDQGVTSPELRRRWTELNTALTEAQEAYYGADAPVLSDAAYDQMMRELEALEEA
HASLVTPDSVTQRVGTATVTDFRPVEHRARLLSLDNVFSDDELAAWLIRTPAERYLVELK
IDGLAVNLLYLNGRLSVAATRGDGRVGEDVTPNVATIAGIPHRLRGDAPDVLEVRGEIFF
PTAGFAALNESLVEAGRAPFANPRNAAAGSLRQKNPQVTAGRPLRMTVHGVGTAEGVAFS
SQSEAYARMKEWGLPVAETCKVVGSAAEVAEFVSYYGEHRHDLTHEIDGIVVKVDDLAEQ
ARLGTTSRAPRWAIAYKYPPEEVNTKLLDIQVGVGRTGRVTPYGVMEPVFVSGSTVDRAT
LHNGFEVERKGVLIGDTVVLRKAGDVIPEIVAPVVALRDGTERAFVMPTHCPSCGTELRP
EKEGDKDIRCPNARSCPSQLQERLFGLASRGALDIEALGWEGAGALLESGHLTDEGDLFA
LTADDLLATDFYTRAAKPAELVDDAVPVRDGRVLSTVGHKLLANLESVKEQPLWRVIVGL
SIRHVGPTAARSLATHFRSLDAIRAASAEELAGVDGVGSVIAEAVLSWFAVDWHVDIVDK
WAAAGVRMADETDESTPRTLEGLTVVVTGSLERFSRDGAKEAILTRGGKAAGSVSRKTDY
VVVGASAGSKAEKAESLGVPILDEAGFERLLAGGPAGLGE
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagagccacgcgtggatcagggcgtcacctccccggagttgcgacgccgctgg
accgagctgaacacggcgctgacggaggcgcaggaggcctattacggcgccgacgcgccg
gtgctctccgacgcggcctacgaccagatgatgcgcgaactggaggcgctggaggaggct
cacgcgtcgctcgtgacgcccgattcggtcacgcagcgcgtcgggacggcgaccgtcacc
gacttccggcccgtcgagcaccgcgcccggctcctgagcctcgacaacgtgttcagcgac
gacgagctggccgcctggctgatccggacccccgccgagcggtatctggtggagctgaag
atcgacgggctcgccgtcaacctgctgtacctcaacggccggctgagcgtcgcggccacc
cgcggcgacggtcgcgtcggcgaggacgtgaccccgaacgtcgccaccatcgccgggatc
ccgcaccggctgcggggggacgcgcccgacgtgctcgaggtccgcggggagatcttcttc
ccgacggcgggcttcgctgccctgaatgagtcgctcgttgaggcggggcgtgccccgttc
gccaacccccgcaacgcggccgccggctcgctgcggcagaagaacccgcaggtcactgca
gggcggccgctgcggatgacggtgcacggcgtcggcacggccgagggcgtggcgttctcc
tcgcagagcgaggcctacgcccgcatgaaggagtgggggctgcccgtcgccgagacctgc
aaggttgtcggctccgcggccgaggtggccgagttcgtctcctactacggcgaacaccga
cacgacctgacccacgagatcgacggcatcgtcgtcaaggtcgacgacctcgccgagcag
gcacgtctcgggacgacgtcgcgggcgccgcggtgggccatcgcgtacaagtacccgccg
gaggaggtgaacacgaagctgctcgacatccaggttggcgtcggccgcacgggtcgggtg
acgccctacggggtgatggagccggtgttcgtgtccggctccaccgtcgacagggcgacg
ctgcacaacggcttcgaggtggagcgcaagggggtcctcatcggcgacaccgtcgtgctc
cgcaaggcgggcgacgtgatccccgagatcgtcgcgcccgtcgtcgcgctgcgggacggc
accgagcgggccttcgtgatgccgacccactgcccctcctgcggcaccgagctgcgcccg
gagaaggagggtgacaaggacatccgctgcccgaacgcccggtcgtgccccagccagctg
caggagcggctcttcgggctcgcctcgcgcggggccctggacatcgaggcgctcggctgg
gagggggcgggggcgctgctcgagtccggtcacctcaccgacgagggcgacctgttcgcc
ctgaccgccgacgacctgctcgccaccgacttctacacccgtgcggccaaacccgccgaa
ctcgtcgacgacgccgtacccgtgcgcgacggccgggtgctctcgacggtggggcacaag
ctgctcgccaaccttgagtccgtgaaggaacagccgctgtggcgggtgatcgtgggcctg
tcgatccgccacgtcggccccacggcagccaggtcgctggccacgcacttccgttccctc
gacgcgatccgtgccgcgtcggcggaggaactggcaggggtcgacggcgtcggatcggtg
atcgcggaggctgtgctgagctggttcgccgtcgactggcacgtcgacatcgtcgacaag
tgggccgccgctggcgtccgcatggccgatgagaccgacgagtcgactcctcggaccctc
gagggactcacggtcgtcgtcacaggctcgctcgagcggttcagccgcgacggggccaag
gaggccatcctcactcggggcggcaaggcggccggctcggtgagccggaagaccgactac
gtcgttgtcggagccagcgccggctcgaaggccgagaaggcagagtcgctcggggtgccc
atcctcgacgaggccggcttcgaacgattgctcgccggcggcccggcggggctgggggag
tga
DBGET
integrated database retrieval system
