Tenacibaculum dicentrarchi: AUW17_07875
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Entry
AUW17_07875 CDS
T04208
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tdi
Tenacibaculum dicentrarchi
Pathway
tdi03030
DNA replication
tdi03410
Base excision repair
tdi03420
Nucleotide excision repair
tdi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AUW17_07875
03410 Base excision repair
AUW17_07875
03420 Nucleotide excision repair
AUW17_07875
03430 Mismatch repair
AUW17_07875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tdi03032
]
AUW17_07875
03400 DNA repair and recombination proteins [BR:
tdi03400
]
AUW17_07875
Enzymes [BR:
tdi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AUW17_07875
DNA replication proteins [BR:
tdi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AUW17_07875
DNA repair and recombination proteins [BR:
tdi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AUW17_07875
NER (nucleotide excision repair)
GGR (global genome repair) factors
AUW17_07875
MMR (mismatch excision repair)
DNA ligase
AUW17_07875
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AUW17_07875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
BRCT_2
HHH
5_3_exonuc
HNOB
AphA_like
HHH_3
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
ALU75185
LinkDB
All DBs
Position
complement(1821587..1823584)
Genome browser
AA seq
665 aa
AA seq
DB search
MNIQQTIQALRDELNQHNYNYYVLDNATISDYDFDIKLKELANLEAENPQYFDANSPTQR
VGGEITKNFDTVTHKNRMYSLDNSYSKDDLLDWEKRLQKMLGTDAIQYTCELKYDGASIN
LTFENGKFIKAVTRGDGFQGDEVTANIRTIKSIPLQVNKSFLSDFEMRGEIILPLEGFHK
MNQERLENDEELYKNPRNTASGSLKLQDSAAVAKRPLDCLLYQVVTEDRTYKTHFEILEN
ARNIGFKVPKTITLANSIDAVFEFINHWDIERHNLPYETDGVVVKVNNLQQQEELGYTSK
APRWAIAYKFKAEQVSTVLHEISYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQIE
KLDIRINDTVFVEKGGEIIPKIIAVDLSKRPADSEPTKYATNCPECDTELVRSEGDAKHY
CPNEFGCAPQITGRIQHFISRKAMDIDGLGGETVDLLRKEGLIKNYADLYDLKTQQIIPL
ERMAEKSAQNMIAGIEKSKEIPFEKVLFALGIRFVGETVAKKLAKHFKSIDNLMTASLET
LISVDEIGDRIAESITEFSNDLGNIELINRLKLHGVQLEVSAESLENQTDKLAEKVFVVS
GVFHQMSRNELKKAIEDNGGKVSSSISKKTSFIVAGDNMGPSKLTKAESLGISIISEQEF
MDMIG
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgaatattcaacaaacaatacaagcgcttcgcgatgaactaaaccagcataattataat
tattatgtattagataacgccactatttcagattatgattttgatattaaattaaaagaa
ttagcgaacttagaagccgaaaatccgcagtattttgatgccaattcaccaacccaaaga
gtaggcggagaaattaccaaaaattttgataccgttacccataaaaaccgcatgtattct
ttagataattcttattcaaaagatgatttattagactgggaaaagcgacttcaaaaaatg
ctaggaacggatgctattcaatatacctgtgagttaaaatatgatggtgcatctatcaat
ttaacttttgaaaatggtaaatttataaaagcagtaacccgtggcgatggttttcaagga
gatgaggtaacggctaatattcgtactataaaatcaattccgttgcaggtaaataaaagt
tttttaagcgattttgaaatgcgtggcgaaattattttaccgcttgaaggatttcataaa
atgaaccaagaacgccttgaaaatgatgaagaactgtataaaaacccacgaaataccgca
agtggaagtttaaaattacaagatagcgctgctgttgcaaagcgtccgttagattgtttg
ttatatcaagttgttacagaagatagaacctataaaacacattttgaaattttagaaaac
gctaggaatattggttttaaagttcctaaaactattacgttagcaaattctattgatgcg
gtttttgaatttatcaatcattgggatatcgagcgtcataatttaccttacgaaaccgat
ggcgttgttgtaaaagtgaataatttacagcaacaagaagagttaggctacacctcaaaa
gccccacgttgggcaattgcctataagtttaaagccgagcaagtatcgacagttttacat
gaaattagttatcaagttgggcgaacaggagcgattacacctgtggcaaatttagaacct
gtgcaattagcaggaactattgtaaaacgagcatcattacacaatgccgatcaaattgaa
aaattagatatcagaataaatgatactgtttttgtagaaaaaggcggggaaattatccct
aaaattatagcggttgatttatctaaaagacctgctgattctgagcctacaaaatacgca
accaattgccctgaatgcgatactgaattggtaagaagcgaaggcgatgccaaacattat
tgcccaaatgaatttggttgtgcgccacaaataacaggaagaatccagcattttataagc
agaaaagccatggatattgatggtttaggcggtgaaacggttgatttattgcgtaaagaa
ggtttaattaaaaattatgccgatttatacgatttgaaaactcagcagattattccgtta
gaaagaatggcagagaaatcggcgcaaaatatgattgcaggaattgaaaaatcaaaagaa
attccgtttgaaaaagtattgtttgctttaggaattcgatttgttggtgaaaccgtcgct
aaaaaattagcaaaacattttaaatcgatcgataatttaatgactgccagtttagaaacc
ttaatttccgtagatgaaattggcgatagaattgcagaaagtattaccgagttttcaaat
gatttaggaaatattgaattaattaacagattaaaactacatggcgttcaattagaagtt
tctgccgaaagtttagagaatcaaactgataaacttgccgaaaaagtatttgttgtttct
ggtgtttttcatcagatgagcagaaacgagcttaaaaaagctattgaagataatggcggg
aaagtaagtagttcaatatctaaaaaaacaagttttattgtggcaggcgataatatggga
ccgagtaaattaacaaaagccgaaagtttaggtatatcgataatttcagaacaggaattt
atggatatgattgggtag
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