Candidatus Thiocaldithrix dubininis: QJT80_14235
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Entry
QJT80_14235 CDS
T09759
Name
(GenBank) efflux RND transporter permease subunit
KO
K18138
multidrug efflux pump
Organism
tdu
Candidatus Thiocaldithrix dubininis
Pathway
tdu01501
beta-Lactam resistance
tdu01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
tdu00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
QJT80_14235
01503 Cationic antimicrobial peptide (CAMP) resistance
QJT80_14235
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tdu02000
]
QJT80_14235
01504 Antimicrobial resistance genes [BR:
tdu01504
]
QJT80_14235
Transporters [BR:
tdu02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
QJT80_14235
Antimicrobial resistance genes [BR:
tdu01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
QJT80_14235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
SecD_SecF_C
Phage_tail_terminator_6
DUF4229
Motif
Other DBs
NCBI-ProteinID:
WGZ90630
UniProt:
A0AA95KHW8
LinkDB
All DBs
Position
complement(2998156..3001989)
Genome browser
AA seq
1277 aa
AA seq
DB search
MNDTHSETTPSLVQHKPGMAGSMAKAFITSPLSLLLLLAFFAVGILGMWITPRQEDPQIS
VPMVDIFVRYPGASAQEVENLISRPLESIMYEMTGVKHVYSYSEREQAMVTVQFDVGQEL
ESSLVKLYDKLESNKDRIPMGAMSPLVKPKGADDVPLVTLTLWSNSVDDANLRLVALDVL
QSLREVVNTSQSFIVDGRHEELRVEILPERLATFGVSLEQVANTIRMANTERNTGTVEPN
DKTFKVYSGSFLTSAQDVNNLMLAVVEGRPVYVRDVATVTEGPSEANRSVGYYTGKTNFY
KDTADNAPAVTIALAKKHGTNGVDVANAILNKLDTLKGRVIPDNVNVSVTRNYGETAKAK
VDELIFKLFVATGVVTLLVWFFLGWRASWVVLIVIPAVITTTVFSAWILGMTIDRVSLFA
LIFSIGILVDDAIVVVENIYRRWLLKEDLDIPTAVDAVREVGNPTILATATVIAALLPMG
FVSGMMGPYMLPIPVLGSVAMVISLFAAFAFTPWLTNKLKPSLKSLQVAAQKEHKQAARM
ERFFRGIIVPLVKDKKKGYAFLFGIVVAFFLSMLLFYPTKDVRVKMLPLDNKPEFNVVIN
MAEGTALPTTANLVHQMAMTLKQIPEVTALQTYTGTASPFNFNGLVRHYYLRQQPWQADI
QVQLTDKHNRERTSHQIAVQARELLQPLLKGTNGKIQVVEMPPGPPVLQSVVAEIYGPDA
NTRRQVAKDMTGFFSKAENLGDVDNMMEADYEVLRFKVDADKAQRNGITAEDINRTLEMA
MGGFILGDIKKNALIEPTRIVLQVPLSARSQIYRLSQLPVPSRTTGQFVPLRELGSFEFA
VQDKPIYRKDLRPVEFVTAETVGRLAAPVYGQAQVEDLLKQANDGKGYRSPDGTLLQDQA
YWLKAPQNVESKSAFEWGGEWTVTWETFRDMGIAFGAALILIYMLIVAQFGNFTLPAIIM
APIPLTLIGIVPGHWLMDAEFTATSMIGFIALAGIIVRNSILLVDFSREAVANGETVMEA
VIHACEARTRPIIITALALFGGSMVILSDPIFQGMAVSLIFGGAVATLLTLIVIPLGCIS
AGPSLRESAGVPLSTPPHNSPSGTKPTKKSTTEIALLTLGYLGMYSVALLKSIAKGGLGW
YAALRKALKKKQSKAIPNTQPPPVKTVVQTAVPAATVTPAANNSVEVPVEPIVEVETAQA
VTESAEQGESVQLKPTDSQLETEVTAPEIVSPVSTAETLSTDSIESNNFTTTPETTKSGK
ERKKPAGRRGIKLKKDI
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atgaacgatacgcactctgaaactactcccagcctggtgcagcacaaaccgggcatggcg
gggtcgatggctaaagcctttattacatcgcccctttccttattattgttgttagctttt
ttcgcagttggcattttggggatgtggattaccccgcgccaagaagacccacaaatttcc
gtcccgatggtggatatttttgttcgttatccgggcgcatcagcccaagaagttgaaaat
ctgatttctcgaccacttgaaagtattatgtatgagatgactggcgttaagcatgtctat
tcttattcagaacgcgaacaagcaatggtcaccgtgcagtttgatgtggggcaagagtta
gaatcatccctcgttaagctctacgataagttggaatcgaataaagaccgtattccgatg
ggggctatgtcgcctttagttaaaccgaaaggtgcggatgatgtgcctttggtgacccta
actttatggtcgaattcggtagatgatgccaatttgcgcttagtggcattagatgtctta
caaagtctgcgcgaggtggtgaataccagccaaagctttattgtggatgggcgacatgaa
gagctacgcgtcgaaatcttacccgagcgcttggcgacttttggtgtctcgctagaacaa
gtggcgaataccattcgtatggcaaataccgagcgtaatacgggtacagttgaacctaat
gataaaacctttaaggtatatagcggcagtttcttaacctcggcacaagacgttaataat
ttaatgttagcggtggtggaagggcgtccagtgtatgtacgcgatgtagcaactgttacg
gaagggcctagcgaagctaatcgttcggtgggttattacacgggtaaaaccaatttctat
aaagacaccgccgataatgcgcctgcggttaccattgctttagccaaaaaacacggcaca
aatggtgtagacgttgctaatgcgattttaaacaaattggataccttaaaagggcgtgtg
attcctgataatgtgaacgtatcagttactcgtaactacggcgaaactgcaaaagctaaa
gttgacgaattaatctttaagttattcgtggcaaccggcgtggttactttattagtttgg
ttcttcttaggttggcgtgcgtcttgggttgtattaatcgtcattccggccgtgattacc
actacggtattttccgcgtggattttgggtatgacgatagaccgcgttagtttatttgcg
ctaattttctcaattgggattttggtagatgatgccattgtcgtggtggaaaatatttat
cgtcgttggttattgaaagaagatttagacatcccaaccgcagtcgatgcagtgcgtgaa
gttggcaacccaactattttagccaccgccacggtcattgcggctttattaccgatgggc
tttgtcagcggaatgatgggcccttatatgttaccgattccagtattgggttcggtggca
atggtcatttcgctatttgccgcatttgcctttacaccttggttaaccaataaactcaaa
cctagcctaaaaagcctacaagtcgctgcgcaaaaagagcataaacaagcggcgcggatg
gaacggttcttccgtggcattattgtgccgttagtcaaagacaaaaagaaaggttatgcc
tttttattcggcattgttgtggcgtttttcttaagcatgttgttgttttatccgactaaa
gatgtacgggtcaaaatgctgccattggataataagcccgagtttaatgttgtcattaat
atggcagaaggcactgctttaccaacgactgcaaaccttgtgcatcaaatggcaatgacc
ttgaagcaaattcccgaagtgacagcgttacaaacctatacaggtacagcgtcaccgttt
aacttcaatggtttagtgcgtcactattacctgcgccaacaaccgtggcaagcggatatt
caagtgcagttgacggataaacataatcgtgagcgcaccagccatcagattgcggtacaa
gcccgtgaattattacagccgttattaaaaggcacgaatggcaaaattcaagtggtggaa
atgccaccggggccaccagtattgcaatcagtggtagccgaaatttatggccctgatgcg
aatacccgtcggcaagtcgctaaagatatgacgggctttttctcgaaagcggaaaactta
ggcgatgtcgataatatgatggaagccgattacgaagtattacgctttaaagtggatgca
gataaagcgcaacgtaatggcattactgcggaagatattaatcgcaccttagaaatggca
atgggtggttttattctgggcgatattaagaaaaatgccttaattgagcctacgcgaatt
gtcttgcaagtgcctttaagtgcgcgttcgcagatttatcgcttatcgcagttacccgta
cccagtcgcactaccggacaatttgtgcctttgcgtgaattgggtagctttgaatttgcc
gtgcaagataaaccgatctatcgcaaagacttacgaccagttgagtttgtaacagcagaa
acggtggggcgtttagccgcgccagtgtatgggcaggcgcaagtggaagacttgttaaag
caagccaacgacggcaagggttatcgttcacccgatggtacattgctacaagatcaagcc
tattggttgaaagccccgcaaaatgttgaaagcaaatcagcctttgaatggggcggtgaa
tggacggtcacttgggaaaccttccgcgatatggggattgcgtttggcgcagccttaatt
ctgatctatatgctgattgtggcacaattcggtaattttaccttacccgccattattatg
gcgccgattccactcaccttaattgggattgtgccgggacattggttaatggatgccgag
tttaccgcaacttctatgattggctttattgccttagcggggattattgtacgtaactct
atcctgctagtggatttttcgcgggaagcggtagccaatggtgaaacggttatggaggcg
gtaattcatgcctgcgaagcgcggactcgccctatcattattactgctttagccttattt
ggcggttcaatggtgattttatctgatcctattttccaaggtatggcggtttcgctgatc
tttgggggagcagtagctaccttattaaccttaatcgttattccattaggttgtattagt
gcaggtccttcattgcgtgaatcggctggtgtgcctttaagtacgcctccgcacaatagc
ccatcgggtacaaaaccaactaagaaatccactactgaaattgctttattgaccctaggt
tatttggggatgtatagcgtagccttgcttaaaagcatagctaaaggtggtttaggttgg
tatgctgcactccgtaaagcattgaagaaaaaacagtcgaaggcaatacccaatacacag
ccacccccagttaaaaccgtcgtgcaaacggctgttccggctgcaacggttactcctgcg
gctaataattctgtggaagtgcccgttgagccgatagtagaggtggagacggctcaagca
gtgacggagagtgcggagcaaggcgagtctgtgcagctaaaaccgactgatagccaactg
gaaacagaggtaactgcgcctgaaatagtaagcccagtcagtacggccgaaacactgagt
acagatagtatagaatcaaacaatttcacaacgacacctgaaactactaaaagtggtaaa
gaacgcaaaaaaccagcaggtcggcgtggaattaaacttaaaaaagatatttag
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