Triplophysa dalaica: 130407591
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Entry
130407591 CDS
T09616
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tdw
Triplophysa dalaica
Pathway
tdw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
130407591 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tdw03400
]
130407591 (lig4)
Enzymes [BR:
tdw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
130407591 (lig4)
DNA repair and recombination proteins [BR:
tdw03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
130407591 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT
BRCT_2
RNA_ligase
LIG3_BRCT
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
130407591
NCBI-ProteinID:
XP_056586612
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All DBs
Position
19:complement(14757778..14761845)
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AA seq
914 aa
AA seq
DB search
MSSAMMEGSSKSDATTETSVAAQVPFINLCTVLEKIQKTKLRPDKSTILKDFIDSWRKFH
AALHKGNTSTTDSFYPAMRLIVPPFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLL
NYRAPTTSQGETGDFALTAYFVLKNRCTSKGNLSLKEVNDFLDSVAFNNASKQKDQVKKS
LLQVITQSSALEQKWLIRMILKDMKLGISKETILKVFHSDAPEYYNVTTDLDKVCRQLHD
PSVSLSEMSINLFSAFKPMLAAVANIGQIEKQMGNQPFYVETKLDGERIQLHKDGDVYKY
YTRNSYEYTQQFGASPLEGSLTPYIHNIFKPHVVNCILDGEMMAYNPTTETFMQKGSKFD
IKRLVDDSELQTCFCVFDVLLLNNGKFANEPLKKRYEILHTIFTPIKGRFQLVSKSEGKT
MQEVVNALNEAIDNREEGIMVKDPMSIYKPDKRGKEWLKIKPEYVDGLMDELDLLIVGGY
WGKGRRSGMLSHFLCAVAEEPSPGEKPTVFHTLCRIGSGYTLKELYDLGLKLAKHWKIYN
KNHPPASILCGMEKPEVYIEPRNSVIIQVKAAEIVSSEMYKTSCTLRFPRIERIREDKEW
HQCMNLTELSQYRSKASGKLASRHLHIQEGQPEKKKRKVVARPKKTICIIDHFRSQDLSA
VAKETDMFEGVEFCVINGNDERSKAELEKYVARAGGIVVQNPGRDTYCVIAAVQNMRVKN
LISSDQHDVVWAAWLVECLEKKKVVPWQPRHMIHMSPPTKEHFAKEYDKYGDSYYVDTNE
QLLRDVFGRIEQVDAEVSSVAQVEAKYSWDDLHTSIFRPYGAYFDRCSDLGDPHTLIKGT
CLDTRALEFRFHGGAVVEKLKEGISHVIIDDEGRILDLKTLRRLYRKKFKIVRESWVTDS
IKAGHVVDEIDYLL
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgtcctctgcaatgatggaaggttcttcaaaaagcgatgccacaaccgagacctctgtt
gccgcacaagttcccttcatcaacctctgcacagttctggagaaaatccaaaagaccaaa
ctccgaccagataaatccacgatcctcaaggacttcatagattcatggaggaagttccat
gcggcgcttcacaagggcaatacaagcaccacagactccttctacccagccatgcgtctc
atcgtgcctccatttgagcgagagcgaatggcttacggtataaaagagagcatgctggca
aaactttacattgatgttttaggtcttcctaagaatggacctgaagctaacaaacttttg
aattacagagccccgactacatcccaaggggaaaccggtgactttgccctcaccgcatac
tttgtcctcaaaaacaggtgcactagcaaggggaatttaagcctcaaagaagtcaatgac
tttttggattcggtagcgttcaacaatgccagcaaacagaaggatcaggtgaagaaaagc
cttttacaggtgattactcaaagctcagcattggagcaaaagtggctaattaggatgatc
cttaaagatatgaaacttggcattagcaaagagacgatactaaaggtttttcattcagat
gcaccagaatattacaacgtcactacagatctggataaagtgtgcaggcaacttcacgac
ccatccgtgtcgctaagcgagatgtccattaatctgttttctgcttttaaaccaatgctg
gctgccgttgccaacatcggacaaatcgagaagcaaatgggcaaccagccgttctatgtt
gagacgaagcttgatggcgaacgcattcagttgcacaaagatggagatgtgtacaaatac
tacaccaggaactcttacgagtacacgcaacagttcggcgcctctccactggagggctct
ctcacgccgtacattcacaacatcttcaaacctcatgtggtgaactgcattttggatgga
gagatgatggcctataaccccacgaccgagaccttcatgcagaaaggcagtaagtttgat
attaaaaggctggtggacgactcggaactgcaaacttgtttttgtgtgttcgatgtgctg
ttgttaaacaacgggaaatttgcaaacgaacccctcaagaagcgttatgaaattcttcat
accatcttcaccccaatcaaaggccgtttccagctggtttctaaatccgaagggaaaaca
atgcaagaagtggtgaacgctctcaacgaagccattgacaatcgggaggaggggattatg
gttaaggacccgatgtctatatacaaacccgataaacgtggtaaagaatggctgaagatt
aaaccggaatatgtcgatggtctgatggatgaactggatctgctcatagtgggtggctac
tgggggaaaggcaggagaagcggaatgttgtcgcattttctttgcgccgtggccgaggag
ccgagtcccggggagaagcccacagtgttccacacgctctgtcgcatcggatcgggctac
actttgaaagaactttacgatctcggactgaagttggccaagcattggaagatttacaac
aaaaaccatcctccggcgtctatcttgtgcggaatggaaaagccagaggtttacatagaa
ccgcgaaactccgtcatcatacaagtcaaagcggcggagatcgtttccagtgaaatgtac
aagaccagctgcaccttacgcttccccagaatagaacggatccgagaggataaggaatgg
caccaatgcatgaacttgaccgaactcagtcagtaccgttccaaggcttctggaaaactt
gcgtcccgacatctacacatccaagagggtcaacctgaaaagaagaagcgtaaagttgtg
gccaggcccaagaagacaatctgtatcatcgaccacttccgatctcaggatttatcagcc
gtcgccaaagagaccgatatgttcgaaggggtggagttttgcgtcatcaacgggaatgac
gagcgctccaaagcggagctggagaagtacgtggcacgcgctggaggtatcgtcgttcag
aaccctggaagggacacgtactgcgtgattgccgccgtccagaacatgagagtgaagaac
ctcatctcttcagaccagcacgatgttgtttgggctgcctggctcgtggagtgtctggaa
aagaagaaggtggtaccgtggcagccgcgtcacatgatccacatgtcaccacccacgaag
gaacacttcgcaaaggagtacgataagtacggagacagttattacgtcgacacgaatgaa
cagctgctcagggatgtgtttggaaggatagaacaagtagatgctgaggtttcgtctgtg
gcacaagtggaagcaaagtactcttgggatgacttgcacactagcatttttaggccttac
ggtgcatactttgaccggtgttctgatttaggagatccgcatacgcttatcaagggtacg
tgtctggacacacgagccttagaatttagatttcatggtggtgcagttgtggagaaactg
aaggagggaatctcgcatgtcataatagatgatgagggaagaattttggacttgaagacg
ctaaggcgtctatataggaagaagttcaaaatcgttcgggaatcgtgggtgaccgattcc
atcaaagcaggccatgtggtggatgagatagactacctcttataa
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