Triplophysa dalaica: 130408874
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Entry
130408874 CDS
T09616
Symbol
rigi
Name
(RefSeq) probable ATP-dependent RNA helicase DDX58
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
tdw
Triplophysa dalaica
Pathway
tdw04622
RIG-I-like receptor signaling pathway
tdw04623
Cytosolic DNA-sensing pathway
tdw05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
130408874 (rigi)
04623 Cytosolic DNA-sensing pathway
130408874 (rigi)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
130408874 (rigi)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
tdw04054
]
130408874 (rigi)
Enzymes [BR:
tdw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130408874 (rigi)
Pattern recognition receptors [BR:
tdw04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
130408874 (rigi)
BRITE hierarchy
Motif
Pfam:
RIG-I_C
CARD_2
RIG-I_C-RD
ResIII
DEAD
Helicase_C
AAA
SNF2-rel_dom
PhoH
Rad17
AAA_22
AAA_19
ATP-synt_ab
Motif
Other DBs
NCBI-GeneID:
130408874
NCBI-ProteinID:
XP_056588327
EnsemblRapid:
ENSTDLG00000003436
LinkDB
All DBs
Position
20:19916446..19935756
Genome browser
AA seq
935 aa
AA seq
DB search
MYELEKENLKRFREYFAKTLRPSVIKVFMNEYLDKVTVDGILSREETSVTEAVKLLFDRM
CDLDTPGWFQAFIDILRASEYTGLCEALMDWDFSKFESLQEHRRLLEKIEPSITKHMKPI
ELLTHMSDTLKTKECEEIRAVETRRGPIAGSEMMVQCLIRSDQYNWFKVLKMALEQCELT
QALQLLEPNGDGKVVNAQDEDMDTSTSETIKTVFQYQEDGESDDTLLKSANNTCVPETSG
IRGGERKLREYQKELSAAAVNGQNTIICAPTGCGKTVVALAICENHLKQFTGRAKVVFLA
TKVDVYEQQHKLFKEHFSCKDPSIRVTGMCGDMEGVSVLWLIENYDIVVMTAQILVNALN
SGEVASLELLSLILLDECHNTTGKHPYNNIMTRYLDSKLTSKTHSLPQVVGLTASVGIGN
FKSPLEAESNILQLCANLDTRVITTVTKHLDELRSYVHTPEKQFFDVPQRTYDPFIKIIK
QIMSKIEQLAQNTYSIGSLSNLQNRDYGSQVYEQWIVSVQKSCKVLQMKDPEEESRICRA
LYNYTEHLRKYNDALIITEDARTIDALDYLDWFFEQVRNAGYDETERKLTEFFDSQRSQL
LDLATNGQQNPKLEELKFILEEEYHSNPQTRTVLFVRTRALADAMKKWIDDTDSLSFLNP
GVLIGKGRKSNSNSSGMTLNNMKGVLESFKSSDNNKILIATSVADEGIDIPQCNLVLMYE
YVGNVVKMVQVRGRGRAQDSRCYLISSCKERIEKERMNMSKEEMVEEAVTRLQSSPTQIS
SKVDMLQREDKVRRDHIRSSPDRPKAQASYELLCGKCKTFACLSDDLRVVQASHHIVLDH
SIFKRCTTQPHKKPKTFDGICKKEKLLCATCKYDWGIIVSYLNIQDLPVLKIESFTLQDR
NTQKQIYFRRWRDVTFAIKTFDITEITPESWPLRE
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgtacgaactggagaaagaaaatttaaagcgcttccgcgaatatttcgcgaagacttta
cgaccatcagtgatcaaagtcttcatgaatgaatacctggataaagtgacggtggatggg
attctgtctagagaggagacgtctgtcactgaggctgtgaagctgttattcgaccggatg
tgtgatctagatacgccaggctggtttcaggccttcattgacattcttcgggcctcagag
tacactggtctgtgtgaagctttgatggactgggacttcagtaagtttgaaagtctgcag
gaacacagaaggcttctggagaagatcgaaccgtccatcaccaaacacatgaagcccatc
gagctgctcacacacatgagtgacacactcaaaacaaaagagtgtgaggagatcagagcg
gtggagacaaggcgtggtccaatagccggcagtgagatgatggtgcagtgtctcatacgt
tcagatcaatacaactggtttaaagtgctgaagatggctctggaacagtgtgaattaact
caagctttacaactactggaaccaaatggagatgggaaggttgtgaatgcacaggatgag
gacatggacacctcgacctcagaaaccataaaaactgtgtttcagtatcaagaggacggt
gaaagtgacgatactctgctgaagagcgccaacaacacctgtgttccggagacatcaggg
atcagaggaggtgagaggaaactcagagagtatcagaaagagctgagtgctgcggccgtt
aacggacaaaacaccatcatctgtgctccgacaggatgtggaaaaactgttgtggctttg
gcaatctgtgagaatcacctgaaacagttcactggcagggcaaaggtcgtcttcttggca
acaaaagttgacgtctatgaacagcagcacaaactttttaaggagcacttctcctgcaag
gaccccagcataagggtgaccgggatgtgtggtgatatggagggtgtgtctgtgctctgg
ctcattgagaattatgacattgtggtgatgacggctcagattctagtcaacgctcttaac
agtggagaggtggcgtctctcgagctgttatcacttattctgctagacgagtgtcataac
accaccggaaaacacccgtacaacaacatcatgacccgatacctggactccaaactcacc
agcaaaacacactctctaccacaggtcgtgggattgacagcatcagtgggcatcggaaat
ttcaagagtccgctggaggctgagagcaatatcttacagctgtgtgccaacctggacacc
agggtcatcaccacggttaccaaacacctggatgagctcagatcttatgttcacacacct
gagaaacagttttttgatgttcctcagcgcacatatgatcccttcatcaaaatcatcaaa
caaatcatgagtaaaattgagcagctggcacagaacacctacagcatcggtagcctgtca
aacctccagaaccgtgattacggctctcaggtatatgagcagtggatcgtctctgttcag
aagagctgcaaggttctacagatgaaggatccagaagaggagagcagaatctgcagagcg
ctctacaactacactgaacatctgcggaaatataatgatgctctgatcatcaccgaggac
gcccggactatagatgctcttgactatctggattggttttttgaacaggtccgaaacgcc
ggctatgacgaaaccgagaggaaactcaccgagttctttgacagtcagaggtcacagttg
ctggatttggccacaaacggacagcagaaccccaaactagaggagctgaagttcattctg
gaggaggaatatcacagcaaccctcagacccgaacagtcctgttcgtcaggacacgagcc
ctcgctgatgccatgaagaaatggattgatgacacagattcactgagtttcctgaatcct
ggagttctgattggaaaaggacgcaaatcaaacagtaacagctcaggaatgactctaaac
aatatgaagggtgttctggagtcttttaagagctctgataacaataagattctcatcgcc
acatccgtcgctgatgagggcatcgatatcccacaatgcaacctggtcctcatgtatgag
tatgtgggtaatgtggtgaagatggtccaagttagaggtcgtggtcgggcacaggacagt
cgatgttacctcatctccagctgtaaggagcgcattgagaaggagagaatgaacatgtct
aaggaggagatggtggaggaagccgttacgcgtctgcagagcagcccgactcaaatcagc
agcaaggtagacatgctacagagagaagataaagtccggagggatcacatcagatccagt
cctgacagacccaaagcgcaggccagctatgagttactctgcggcaagtgtaagacgttt
gcatgtctgagtgacgacctcagggtcgtacaggcgagtcatcacattgttcttgatcat
tccatcttcaaacgctgcacaacacaacctcataaaaagcccaagaccttcgatggtatc
tgtaagaaggagaagctgctgtgtgccacctgcaaatatgactggggaatcatcgtctct
tacctcaacatacaggatctgccggtgctgaagatcgagagtttcaccctgcaggaccgt
aacactcagaaacagatctacttcaggagatggcgcgatgtgacgtttgccataaaaacg
tttgacatcacagagatcacgccagaatcatggccattaagagaatga
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