Triplophysa dalaica: 130426731
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Entry
130426731 CDS
T09616
Symbol
smcr8a
Name
(RefSeq) guanine nucleotide exchange protein smcr8a
KO
K23611
guanine nucleotide exchange protein SMCR8
Organism
tdw
Triplophysa dalaica
Pathway
tdw04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
130426731 (smcr8a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tdw04131
]
130426731 (smcr8a)
Membrane trafficking [BR:
tdw04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
130426731 (smcr8a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Folliculin
ERM_helical
Motif
Other DBs
NCBI-GeneID:
130426731
NCBI-ProteinID:
XP_056609623
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Position
7:16614788..16619665
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AA seq
869 aa
AA seq
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MIGSPDVVAFTKEDDFGESFSDPLSLPEEFSVPLFNHAANANPWTKTSYAKFSKDFILIS
EFSEQVGPQPLLTIPSDPKVCGTFDLNYFSLRIMSVDYQASFVGHPPGSNYPKLNFVEDS
KVVLGDSKEGAFAYVHHLTLYDLEARGFVRPFCMAYISADERKIMQQFQELSSQFSKASE
CLKTGNRKAFANELEKKLKDLEYTRSVLHKEADLQKTNSGCYSTQAIEKANELANVEKSI
YEHKDLLRQITSYPSRKRKDMDFVQCETEKATEIIAVDDTLTCNSDNAVKSVETESDSRK
STYTPQFIKAKSAKCFDKRLKTLEELCETNFFHQTLEQLNLVEKSFRGDLCFIYSSQINR
ALLTKQRVTSFLFEAEADWIDETAKHFKVSSNTPPIPILNLSAAPMNLESYTMSVDIDRI
KPSGESIEMPAESSTSDITQETSEAADTETKGSFSSDKSIEAFGSVSPSNLHSNYFEGLE
RSKVSTTSSSEDQKVGKMSPQRTSEGSPAEVFGNGHLVPMDSACCIGQDGFIYEEPTPEI
AQECCGDMVVNQEPLSLLHGDPVLQMDYILEDSTLLGSPNKGLMFSELNTSVLSEEAARI
NIEDVSDSTSYMSTSTSSDRAASPFTYGTVLTLRQKKKAGHNALRFIRQYPFAHQAIFCL
LSGRTLVILGSDEGTVRKLANALLIFVPNLGKYGETVQPWLSTPFQLTDLQRWKLIGLQR
AVSPAGSSILHSLNRYSRYISILDCDNKTLRCPPYKGTLINQMADHRTQIKRGSTYFLHV
QSLLTQLTAKAFLYTFCHHIHLPMDMNDQGSVTSRRTNFLLQLGCTVEESKIVQYLSELI
KKHCIQGHSKGVNQSFFSFDYTTSYLYKI
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgattggctcaccagatgtggtggcgtttaccaaagaagatgactttggggaatcgttc
tccgatccattgtcgcttccggaggagttttctgtgcctttgtttaatcatgctgccaat
gcaaatccctggacgaagacatcctatgcgaaattctcgaaggatttcatcctcatctct
gagttttcagagcaggttggaccacagccactactcaccattcccagcgaccccaaagtg
tgcgggacattcgacctcaactacttttccctccgtatcatgtcagtggactaccaagcc
tcttttgtaggacatccgcctggaagtaactacccaaagcttaattttgtggaggactcg
aaagtcgtccttggtgattctaaggagggagccttcgcctacgtgcatcatctgacgctg
tatgatttagaagctcgtggttttgtgcggcccttttgtatggcttacatatcagcagat
gagagaaagattatgcagcagtttcaagagctgtcatcacagttcagcaaagcttctgaa
tgtctcaaaacgggaaacaggaaagcgtttgcaaatgagctggagaagaaactgaaagat
ttggagtacacccgatctgtgctgcataaagaggcagatctgcagaaaacgaacagcggc
tgttattccacacaagctattgaaaaggcaaatgaactggccaatgttgaaaagtccatt
tatgaacacaaagatctgctgagacaaatcacatcttatccttcgaggaaaaggaaagat
atggattttgtgcaatgtgagacagagaaagccacagagatcattgcagttgatgataca
ctaacgtgtaactccgacaatgcagtcaagtctgtagaaactgaaagtgatagtcggaag
tctacatacacgcctcagtttataaaagccaagtctgccaagtgcttcgacaaacgtttg
aaaacgcttgaagagctctgcgaaacaaactttttccaccaaaccctagagcagctgaac
ctagttgagaagtccttccgaggagatctctgcttcatttactccagccagatcaacagg
gctcttctgaccaaacaaagagtaacgagtttcctctttgaagccgaagcagactggata
gacgaaaccgcaaagcatttcaaagtcagttcaaatactcctccaattcccattctgaat
ttatctgctgcgccgatgaacctcgagtcgtacactatgtctgtagatatagatcgcatc
aaaccgagcggggagtctattgaaatgcctgcagagtcgagtacgtctgacatcacccag
gagacctcggaggctgcagacacagaaaccaaaggcagtttcagtagtgacaaaagcata
gaggcctttggaagtgttagtccttccaatctgcactcaaattactttgaaggtctcgaa
aggagtaaagtatccaccacttcctcatctgaagatcaaaaagtgggcaagatgtctcca
caaaggacatctgagggaagtcccgctgaggtgtttggaaatggacatctcgtcccaatg
gactcggcgtgctgtattggacaggatggttttatctacgaggaaccgacacctgagatt
gctcaggagtgttgcggggacatggtggtgaaccaagagcctttgtcccttcttcatgga
gatcccgtcttacagatggactacatcctggaagactcgactctcttggggagccccaat
aaggggttgatgttttcagaacttaacaccagtgttctctctgaggaggcggcaagaata
aacatcgaagatgtctccgatagcactagttacatgagcacctccaccagttctgacaga
gcggcgtctccttttacctacggcaccgtgttaacactaaggcagaagaagaaggcaggg
cacaacgctcttcggtttatcagacaatatccattcgctcatcaagccatcttctgcctt
ctgagtggccggacacttgtcatactagggtcagatgagggcaccgtaagaaagctagcc
aatgctttgttaatttttgttcccaaccttggtaaatatggcgaaactgtccagccgtgg
ctttcgacaccatttcagcttactgacctgcagagatggaaacttattggattgcagaga
gccgtctctccggccgggtccagcatactccactctttgaatcgatacagccgttacata
agcattttggactgtgataacaagacccttcgatgtccgccatacaaaggaacactgatc
aaccaaatggcagaccacaggacacagatcaaacgtggcagcacctactttcttcatgtt
cagagcctcttgactcagcttacagctaaggccttcctgtacacattctgtcatcacatt
caccttcccatggacatgaacgaccagggctcagtgacatcccgcaggactaacttcttg
ttacagctgggctgcactgtggaagagagtaaaatcgttcagtacctgagtgaactcatc
aagaaacattgtattcagggacactcgaaaggggtcaaccagtcgttcttttcttttgat
tataccaccagctatttgtacaaaatttga
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