Triplophysa dalaica: 130429835
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Entry
130429835 CDS
T09616
Symbol
slit1b
Name
(RefSeq) slit homolog 1b isoform X1
KO
K06838
slit 1
Organism
tdw
Triplophysa dalaica
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tdw00536
]
130429835 (slit1b)
Glycosaminoglycan binding proteins [BR:
tdw00536
]
Heparan sulfate / Heparin
Axon guidance molecules
130429835 (slit1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
Laminin_G_1
LRRNT
LRR_9
LRR_1
EGF_TEN
hEGF
LRRCT
LRR_14
EGF_DL_JAG
EGF_3
EGF_2
EGF_Teneurin
EGF_CA
Motif
Other DBs
NCBI-GeneID:
130429835
NCBI-ProteinID:
XP_056614638
LinkDB
All DBs
Position
10:complement(21159367..21193667)
Genome browser
AA seq
1529 aa
AA seq
DB search
MMVWAGLWIWGALGALVLAGQSEACPPHCSCTGTTVDCHGLAFKNVPRNIPKNTERLDLN
GNNLTHIGKDDFTGLKHMRIINLMDNQIVTIDKGAFSDLKELDRLRLNRNRLQQIPELLF
LKNPVLSRLDLSENVIQVIPRRAFRGATDIRNLQLDKNRISCIEEGVFRAMRALEVLTLN
NNNISSIPISSFNHMPKLRTFRLHSNSLHCDCHLSWLSQWLRQRPALGLFTQCSSPANLH
GLNLAELQKKEFTCTGIFDSSPQTCSLVSGSCPPMCTCSNNIVDCRGKGLTAIPANMPES
MTEIRLEQNGIKSVPPGAFAPYKRLRRIDLSNNQISDIAPDAFQGLRSLNSLVLYGNKIT
DLPRGVFEGLTALELLLLNANKIHCVRVNVFQDLENLSLLSLYDNKIQTLAKGTFSPLKS
IQTLHLAQNPFVCDCGLKWLADFLRSNPIETSGARCSTPRRLANKRISLIKSKKFRCSAA
KEQYHIPGTEDTRLNKDCNSKPVCPPKCRCEATVVDCSNLRLTRFPEHLPLATTELRLNN
NDLSILEATGLFRSLNHLKKINLSNNKISEIEDGAFDGASSVLELHLTANHLVSLRGGMF
RGMDGLRMLMLRNNLIRCVHNSSFSGLQNVRLLSLYDNQLTTIMPGAFDTLPNLSTLNLL
ANPFNCDCRLSWLGEWLRSRQIVTGNPRCQNPAFLKEIPLQDVAKPDFSCDKAIIEDDTS
CVPKPECPEECTCLDTVVRCSNKHLFGLPRGVPHNVTELYLDGNQFVSVPKELSTFKHLQ
LVDLSNNKISSLSNSSFANMSQLTTLILSYNALNCIPPFVFGGLSSLRLLSLHGNNISEL
HQEVFRDSSSLSHLAIGANPLYCDCRLRWLSDWVKSGYKEPGIARCAGPQGMEGKLLLTT
PGNTFQCTGPVDPSVSEKCSLCASNPCQNQGQCHNDPVHLYKCMCPQGYKGKNCEVSVDA
CECNPCVNGGTCQSEHERKGFSCACPPGYDGQFCEVDVDDCVDNKCENGTICVDGVGNYT
CVCPHPFSGQRCEEYEEDLCYPGQNPCHRGSTCIPTVTGPKCICPPGFVGDDCSIDYNEC
EGHYCQNGARCVDNLVGYTCVCPQGYSGRLCEVSLSPSGCELLHCENGAPCAESEGGAVC
QCLPGFGGPQCEKLLSVNFIDRDSYLLLSDLKNWPQTNITLQVSTAEDNGVLLYNGVNDH
IAVELYEGHVKVTYDSGNQPGSTIYSSEIVNDGEFHTVELVTYDRMVNLSVDGGLPTTLD
SLGHVQPLTKDASLYVGGMPENSQSLSFNPWPPVNGSSFQGCIRNLYINNELQDFTQTQM
KPGVVPGCQPCQELRCVHGLCQPETAVGPVCRCQPGWGGPHCDQALLTAAANPCQKNKCV
HGTCVPVDVQSYRCECAEGFHGSLCSQPDVPPSPCTALNCQHGYCEVSQTGQAQCICDSG
YSGQLCDIVAPCRGESVRDFHRIRRGELQCRSTQPLSWQECRGGCRADTGLCCTSIRVRR
RRYSFQCDDGTSFTQDIEKTVECGCDKCV
NT seq
4590 nt
NT seq
+upstream
nt +downstream
nt
atgatggtttgggctggtttgtggatttggggtgcgttgggtgccctggttctcgcaggt
cagtctgaagcgtgtccgccgcactgctcctgtacggggaccactgtggactgccatgga
cttgccttcaagaacgtgcctcgaaatataccaaagaacacagagagactagacttgaat
ggaaacaatctcacacatatcgggaaggacgacttcactggtctgaagcacatgagaatt
ataaatctgatggataatcaaatagtgactatagacaaaggagccttcagtgatctcaag
gaattggatagactgcgtctgaacagaaaccgactccagcagatccctgagcttctgttt
ctgaagaatcccgttctctccagacttgacttaagtgagaatgtcattcaggtcatccca
aggagagcgtttcgaggcgctactgacatcaggaacttacagctggacaaaaaccgcatc
agctgcattgaggagggagtgtttcgtgccatgagagccctggaggtcctcacgctgaac
aataacaatatcagctccatccccatatccagcttcaatcacatgcccaagttacgtacc
tttcgtctgcactcgaacagtctgcactgcgattgtcatttgtcatggctgtctcaatgg
ctcagacagagaccagcgctgggactgttcacacagtgcagttctccagcaaacctacat
ggcctaaacctggctgaactacagaaaaaagagttcacatgcactggtatttttgattca
agcccccagacgtgtagtctagtgtctggttcttgccccccgatgtgcacctgcagcaac
aacatcgtggactgtagaggaaaaggtctcacagccattccagccaatatgccggaaagc
atgactgaaatacggttggagcagaatggtattaaatctgttcctccaggggcgtttgcc
ccctacaagagactacgaagaattgatttgagtaataaccaaatatctgacattgccccg
gatgcttttcaaggcttgcggtcactcaactcgctggttctttatgggaataagattaca
gatctgcctcgaggtgtttttgaaggacttaccgcattagaattactgctattaaatgcc
aataaaatccactgcgttcgtgtgaacgtcttccaggaccttgagaacttgtctttattg
tctctgtatgacaataagatccagactttagccaaagggacgttttcgccgctgaaatcc
atccagacactacacttggctcagaacccattcgtatgtgactgcggtttgaagtggcta
gcggactttttgcgctcgaacccgattgagaccagcggtgcgcgctgctccaccccacga
cgcctcgccaacaaacgcatcagtctaatcaagagcaagaaattcagatgttcagcagcc
aaggaacagtaccacattcccggtacagaggacacacggttaaacaaggactgtaacagc
aaacctgtttgtccaccgaaatgccgctgtgaagctactgtagtggactgctccaatctg
cgtcttaccaggttccccgagcatctgcctctcgctaccacggaacttcgtcttaataac
aacgacctgtccatcctggaggcgacagggctctttcggtctctcaaccatctgaagaag
ataaacctaagcaacaataaaatctcagagattgaggacggagcttttgacggggcatcg
tctgttcttgaacttcatctgaccgccaaccacttggtgtctttgcgtggaggaatgttc
aggggaatggacggattacgcatgctgatgctcaggaataatctcatccgttgcgtccac
aatagcagcttcagtggtcttcagaatgttcgtctgctctcgctttatgacaaccagctt
acgaccatcatgcctggagccttcgacaccctgccaaacctttccaccctaaacctgctg
gcaaacccgtttaactgcgattgtcgtctgtcatggttgggagaatggcttcgttctcga
cagattgtgacggggaaccctcgctgtcagaaccctgcctttcttaaagagatcccattg
caggatgtggcaaaaccagatttcagctgtgacaaggccatcattgaagatgacactagc
tgcgtccccaagccagagtgtcccgaagagtgcacttgtctggatacagtggtgcgttgc
agtaacaaacacttgttcggcttaccccgtggcgtcccacacaatgtcactgaactatac
ctggatgggaatcagtttgtctcggtgcccaaagagctttcaacgtttaaacacctacag
ctggtggacttgagcaacaataaaatcagttctttgtccaactcgtcctttgccaacatg
agccagctgaccacactgatcctgagttataatgccctgaactgtatccccccttttgtt
ttcgggggcctgtcctctctacggctgctctctcttcatggcaacaatatttctgaatta
caccaagaagtctttagagattcctcatctttatctcatctggccattggagcaaatcct
ctgtactgtgactgtcgtctacgttggttgtctgactgggtgaaaagtgggtataaggaa
cccggcatcgcccgctgcgcagggccacagggcatggagggcaaactgctgctcaccaca
ccaggcaataccttccaatgcacaggccccgttgatccatctgtgtctgagaaatgcagc
ctgtgtgcctcaaacccctgccagaatcagggccaatgtcacaatgaccccgtacatcta
tacaaatgcatgtgtccacagggttacaagggaaaaaactgcgaggtctccgtcgacgcc
tgtgaatgcaatccatgtgtaaatggcggcacctgtcaaagtgaacacgaaagaaaaggc
ttcagctgtgcgtgtccacctggatatgacggtcagttctgcgaggtggatgtcgatgat
tgtgtcgataacaagtgtgaaaatggcaccatctgcgtggacggagtgggaaattacacc
tgtgtctgtcctcaccccttttcaggccaaagatgtgaagagtatgaggaagatctgtgt
tatcctggtcaaaatccctgtcatcgtggatctacttgtattccaacagtcacaggacca
aaatgcatctgtccacctggttttgtaggagatgactgcagtatagattataatgaatgt
gagggacattattgtcagaacggtgcacgatgtgtagataatctggtaggatatacctgc
gtttgtccacagggatacagtggtcgattatgtgaagtgtctctctctccgtccggctgc
gagttgttgcactgtgagaacggcgccccctgtgcagagagtgagggaggtgcagtgtgt
cagtgtttgccagggttcgggggaccacaatgtgaaaagcttctcagtgtcaacttcatt
gacagagactcttacctgctgctcagtgatcttaaaaactggccccaaaccaacataacc
ctgcaggtctccacggctgaggacaatggcgtccttctctacaatggagtcaacgaccat
attgcagtagagctgtatgagggccatgtcaaagtgacctatgattcaggaaaccagcca
ggcagtaccatttatagctctgaaatagtgaacgacggagagtttcatacggtcgagtta
gttacttatgaccgaatggtcaatctgtcagttgacggagggcttcccacgactctagac
agtttgggacacgtccaacctctcactaaagacgcctcgctatatgtaggcggtatgcct
gaaaactcccagtcactgtcgttcaacccgtggccgcctgtcaacggatccagttttcag
ggctgcattcggaatctgtacattaataatgaactgcaggattttactcaaactcagatg
aagcccggggtggtgccggggtgccagccctgtcaagagctccgctgcgtgcatggactg
tgccagccggagaccgctgtcgggcccgtgtgccgctgtcagccgggctggggaggacct
cactgtgatcaagctcttcttacagctgctgctaacccttgccagaaaaacaagtgtgtc
catggtacgtgtgttccagtagacgttcaatcttaccgctgcgagtgtgcggagggtttc
cacggctccttatgcagtcaaccggacgtccctcccagtccctgcacagcactaaactgt
caacatggctactgtgaggtatcacagacgggacaggcgcaatgtatctgcgacagtggc
tacagtggacaattatgtgacatagttgctccctgtagaggagaatctgtgagggacttt
catcgcatacgccgcggtgagctccagtgtcgtagcacccagcccctgtcctggcaggag
tgtcgcggcggctgcagggcggacacaggcctgtgctgcaccagcatcagagtacgccgc
agacgctacagcttccagtgtgacgacggcacgtcatttacacaagacattgagaagacc
gtagaatgtggctgtgataagtgtgtgtag
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