Triplophysa dalaica: 130437647
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Entry
130437647 CDS
T09616
Symbol
kdm2ab
Name
(RefSeq) lysine-specific demethylase 2A isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
tdw
Triplophysa dalaica
Pathway
tdw03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
130437647 (kdm2ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tdw03000
]
130437647 (kdm2ab)
04121 Ubiquitin system [BR:
tdw04121
]
130437647 (kdm2ab)
03036 Chromosome and associated proteins [BR:
tdw03036
]
130437647 (kdm2ab)
Enzymes [BR:
tdw01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
130437647 (kdm2ab)
Transcription factors [BR:
tdw03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
130437647 (kdm2ab)
Ubiquitin system [BR:
tdw04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
130437647 (kdm2ab)
Chromosome and associated proteins [BR:
tdw03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
130437647 (kdm2ab)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
130437647 (kdm2ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
JmjC
LRR_6
F-box
Cupin_8
LRR_4
Motif
Other DBs
NCBI-GeneID:
130437647
NCBI-ProteinID:
XP_056625039
LinkDB
All DBs
Position
16:complement(16814035..16830039)
Genome browser
AA seq
1271 aa
AA seq
DB search
MEEDSSRYSKRLRSGTRRRYQDDGISDDEIEGKRSFDVEEKLHSDRYNWDLVKIMDGKDF
TLEYIQREGLRDPIIFKKADGLGIKMPDPDFSVSDVKLFVGSRRMIDVMDVTTQKGIEMS
MGQWRRYYETPPSEREKLYNVISLEFSHTKLEHLVKRPASVDMIDWVDNMWPRHLKELQR
DSTNAINDMQYPKVQKYCLMSVEGCFTDFHIDFGGTSVWYHILRGGKVFWLIPPTHQNLE
LYENWVLSGKQGDIFLGDKVKECQRIELKQGYTFMIPSGWIHAVYTPKDTLVFGGNFLHS
FNIPMQLNIYNIEDRTRVPSKFRYPFFFEMCWYVLERYLYCMTNTSHLTPEFQKHSLGIG
LKREDVLKQGYNGHSGNDEEEEDIKQEDENEEVSPTPPARPGVKVHLTPFELEGLWQLLN
KLEELPAHKKCVPSGIRNAPALLSDIRKLLVEHASDSPKLSYTGKPIVKWPKRPSWYQPP
PPPPSLLYSPRTPGSAPILPPVPRPVKPSSSISALRRRRVRCKRCEACMRTECGNCNYCR
DMRKFGGPGRLKKSCVLRQCLAPALPLTAVCAICKEGCQESEDSESIQTLMECSECAQIT
HPECIKVPGEGVINKDLPSCWECPKCVHGKKNKSSSSSEDESESSISNGSLSSGPPVKRA
YREGIGVGGLRLGRRGRPPLSPSSLPLTRSRRQPPPSQRLLLQHQQNRKRAGALELQLRK
RIKLERNKILQSPRSAVSLSPKLLRQRSLERGGMVRPAPTRSNSRSRGVSSCRGRGVRLR
GGGLGGGLRERMEVEEERDGSVEEEPVERKENGKCDGKENRPQRRGAKAGEENSDGHQNR
ESEGSSEGVEPTQSDTSAVLSNDARGQGSCVTVTLHPSRGRRDPSAIVPKLEANLSSRSI
LPNSKALLRPPLRNGGRCSDSPHSLSERSHLSKPHVLSSTHTLTRSTSKHQNLVRNLRSK
FKDSPHRLTRERIGKKPRSEREKSSGSCPSSTLRLSREENGGNEPGWEREVWVSVFRYLT
RAELCICMAVCKTWYKWGCDKRLWTRISLSRCCSISPQALTGIIKRQPVTLDLSWASISK
KQLSWLINRLPGLKDLVLSGCSWISISALSSPSCPLLRSLDLRWADGIKDQQIRELLNPP
GSDNRSQLKNVQCLWLCGLEVTEATLRLIIRHMPLLTRLELSHCPITDSALNLLSAVGSS
TRNTLTHLNLAGCSRLTDRCLVYLRRLSCLSVLDLRDCKEVSRQACESFISELSVNGLYC
LSDDKLVQRIS
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggatagttcccgctatagcaaacgcctgcggtcaggcacgcggcgacggtac
caagatgatggcatttcagatgatgagattgagggaaagaggtctttcgatgtggaagag
aaactccacagtgatcgatacaactgggatctggtcaaaattatggacggaaaagacttc
accttggagtacatccaacgggagggactccgggaccccattatctttaagaaagcagat
gggcttggcataaagatgcctgacccagacttcagtgtcagtgatgtaaaattgtttgtg
ggcagtcgcaggatgattgatgtcatggatgtgaccactcagaaaggcattgagatgtca
atgggtcagtggaggagatactatgaaacgcctccatctgaaagagaaaagctgtataat
gtcatcagcctggagtttagccatacgaaactagagcatctggtcaagagacccgcctcg
gttgacatgattgactgggtggacaacatgtggccacgacaccttaaagagctccagaga
gattccaccaatgccatcaatgatatgcagtaccctaaagtgcagaagtattgtctgatg
agtgtcgagggatgcttcacagatttccacatagactttgggggtacatcagtctggtat
cacatcctcaggggagggaaggtgttctggctcatcccccccacacatcagaacctggag
ctctatgagaactgggtgttatcgggaaaacagggtgacatttttcttggcgataaagtc
aaggaatgccaacggattgaactgaagcaaggctacacatttatgatcccatcagggtgg
atccatgctgtgtacaccccaaaggacacactggttttcgggggtaattttctgcacagc
tttaacattcccatgcagctcaacatttacaacattgaggaccgcacacgggtcccttct
aaattccgctaccctttcttctttgagatgtgctggtacgtgctggaacgttacttgtac
tgtatgaccaacacttctcacctcacgcccgagttccagaaacactcgctgggcataggg
ctaaagagggaggatgtgttgaaacaaggatataatggtcattcaggaaatgacgaagag
gaggaggatataaagcaggaggatgagaatgaagaggtttcacctacccctcctgctcgt
ccaggggtaaaggttcacctgacaccctttgagctggagggactttggcagttactgaac
aagttggaggagctaccagcacataagaaatgtgtcccatcaggaatcagaaatgcccca
gcactgctcagtgacatacggaaactgctagtggaacatgccagtgatagccccaaattg
tcttacactggaaaaccaattgtcaaatggcccaaaaggccctcgtggtatcagccgccc
cctcctcccccatctctgctgtacagcccccgcactcccggttcagctcccattctgccg
ccggtcccgcgacccgtgaagccgtcttcctccatctcagctctgagacgcaggcgcgtc
cgctgcaagcgctgcgaggcatgtatgcgtacagagtgtggcaattgcaactactgtagg
gacatgaggaagttcggaggacccggcaggctcaagaaaagctgtgtgctcagacagtgt
ctagcaccagcactgcctcttacggctgtgtgtgccatatgcaaggaaggctgtcaggag
tcagaagactccgagtctatccaaacgctcatggaatgttcagagtgcgctcagatcact
catcctgaatgtataaaggtgccaggggagggtgttatcaataaagaccttcccagttgt
tgggagtgtccaaaatgtgtccatggcaagaagaacaagtcttccagtagtagtgaggat
gagtctgagagcagcatctccaacggaagtctctcgtcaggtcctccggtcaagcgggca
tacagggagggaatcggagttgggggcttgcgattaggacgccgaggacggccgccactc
tccccctcctctctgcctctgacccgctccagacgtcagccgcccccttctcagagactc
ctgcttcaacatcaacagaacaggaaaagagccggagcactggagttacagctcaggaaa
aggatcaaattggaaagaaacaaaatcctccagtcgccccgttcagctgtctctctttct
ccaaagctcctgcgtcagcggagtctggagagagggggcatggtcaggccagcacctact
aggagcaactcgcgcagcaggggtgtgtcctcttgtcgtggaagaggagtacggctcaga
ggtggcggcctaggtggtggcctcagagaaaggatggaggtggaggaagaacgggacggt
tctgttgaagaggaaccagttgagagaaaggagaacggaaaatgtgatggtaaagagaac
cgtccgcagagacgaggggcaaaagcaggggaggagaacagtgacggtcatcaaaacagg
gagagcgagggcagtagcgagggtgtagagcctactcaatccgacacttctgctgtacta
tccaatgacgccaggggtcaggggtcatgtgtcacggtaactttgcatccgtcaaggggt
agacgtgaccctagcgccattgtacccaaattggaagccaacctgtcctcaagaagcatt
ctgccaaactccaaagccctgctgcgcccccctctgcgcaatggtggacgttgctcggat
agtcctcattcactgtcagaaagatcccatttgagcaaaccacacgttctttcatcaaca
cacactttaacgagaagcacgtctaaacaccaaaacttggtgcggaatttacggtctaaa
tttaaagattcccctcatcgcctgactcgtgagagaatcgggaaaaagcctcgatcggaa
agggaaaagtcctccggctcctgtccaagttcaaccttgcggctctcacgcgaagagaac
ggagggaacgagcccggctgggagagagaggtgtgggtgtcagtgttccgctacctaact
cgggctgaattgtgcatctgtatggcggtttgcaagacctggtacaaatggggctgtgac
aagcgtctgtggacgcggatcagtctgagccgatgctgttcaataagtccacaggccctc
acaggcatcatcaaacggcagcctgtcacactggacctctcctgggccagcatttccaag
aaacaactcagctggctcatcaaccgacttccagggcttaaagatctggtgctatcaggg
tgcagttggatttcaatttctgcactgagctctccaagctgtcctttacttcgctcgtta
gacctgcgctgggctgatgggatcaaagatcaacaaatcagggagctgctcaacccacca
ggcagcgacaaccgttcccagctaaagaacgtgcagtgcttgtggctgtgcggtttagag
gtgaccgaagcgacgctcaggctgatcattagacacatgcctctgctgacccgcctggag
ctctcacattgtcccatcacggacagtgctctcaacctcctcagtgctgtgggctcctcc
acacgcaacacacttacccacctcaatttggcaggttgcagtcgcctaacagaccgttgt
ttggtatacctgcggcgtttgtcctgtctctccgtactggacctccgtgactgcaaagag
gtttcgcggcaggcatgtgaaagctttatctccgagctgtctgtcaacggcctctactgc
ctgtcagatgacaagctcgtccagaggatatcataa
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