Tepidibacter aestuarii: T8CH_2864
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Entry
T8CH_2864 CDS
T08095
Symbol
ligA
Name
(GenBank) DNA ligase (NAD-dependent)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
teb
Tepidibacter aestuarii
Pathway
teb03030
DNA replication
teb03410
Base excision repair
teb03420
Nucleotide excision repair
teb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
teb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
T8CH_2864 (ligA)
03410 Base excision repair
T8CH_2864 (ligA)
03420 Nucleotide excision repair
T8CH_2864 (ligA)
03430 Mismatch repair
T8CH_2864 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
teb03032
]
T8CH_2864 (ligA)
03400 DNA repair and recombination proteins [BR:
teb03400
]
T8CH_2864 (ligA)
Enzymes [BR:
teb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
T8CH_2864 (ligA)
DNA replication proteins [BR:
teb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
T8CH_2864 (ligA)
DNA repair and recombination proteins [BR:
teb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
T8CH_2864 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
T8CH_2864 (ligA)
MMR (mismatch excision repair)
DNA ligase
T8CH_2864 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
T8CH_2864 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
RNA_ligase
Nlig-Ia
DUF6642
RNA_pol_A_CTD
DUF7130
Motif
Other DBs
NCBI-ProteinID:
CAH2214723
LinkDB
All DBs
Position
T8CH:complement(2851082..2853106)
Genome browser
AA seq
674 aa
AA seq
DB search
MDIKKRVEELTQIINYHNHKYYVEDDPEIDDYDYDMLMKELMDIENKHPEYKKEDSPTQR
VGGVALDKFKQVVHKTPMLSLSNAFSENDLIDFDNRIKGIVNSDVEYVVEFKIDGLSAVI
TYENGALKIGATRGDGQVGEDVTNNLKTVKSIPMRINENSNLQVRGEVFIPKDKFQKLND
YQEENGMNLFANPRNAAAGSLRQLDSKIAAKRHLDMFIFNLEGIDEDKFKTHSESLECLK
NLGFKVSPNYKICKNIQEVIEFINYWTDHRDELKFDIDGMVIKVNDLKQRDILGNTTKSP
RWAIAYKFPAEKKKTKVLDIIIQVGRTGNLTPTALLEPVQIAGSIVSRATLHNEDYIKQK
DIKIKDTVIIQKAGDIIPEVVEVVKDERDGTQIEFEMPDECPECGFETSRLDGEAAVKCT
NISCPAQIRRGIIHFVSRNAMNIDGLGERIVALLLKENLIKDIADIYYLKKEDLVPLERM
GEKSSQNLIEAIQKSKENDLSRLVFGLGIKYIGSKGAKILASNFDDVYKIIEAEKEDLIN
LEEFGEVMAESVVDFFNNDKNLELIEKFKAVDVNLKSLKTESNEVKIFEGMKIVLTGTLE
KYKRNDVKEIIEKFGGKVTGSVSKSTHVVFAGRDAGSKLDKANSLGIKVIDENTFDEIIN
LSSKEEVLKHLDIE
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggatattaagaaaagagtcgaagaacttactcaaattataaattatcataatcataaa
tactatgttgaggatgatcctgagattgatgattatgattatgatatgttgatgaaagaa
cttatggatatagaaaataaacatcctgaatataaaaaagaggattctccaactcaaagg
gtaggtggagttgcacttgataaatttaaacaagtagtacataaaactcccatgttaagc
ctttctaatgcattttcagagaatgatttgatagattttgataataggataaagggtata
gtaaatagtgatgttgagtatgtagtagaatttaagatagatggattatcagccgttata
acttatgaaaatggagcattaaaaataggtgcaactcgtggagatggacaagtaggagaa
gatgtaactaacaatttaaaaactgtaaaaagcatacctatgagaattaatgaaaattca
aatctacaggtaagaggagaagtatttataccaaaggataaatttcaaaagcttaacgac
taccaagaagaaaatggtatgaatttatttgcaaatcctagaaatgcagcagctggttca
ttaagacagcttgattctaagattgctgcaaagagacatttagatatgtttatatttaat
cttgaaggaatagatgaagataaatttaaaacgcatagtgaaagcttggagtgtttgaaa
aatttaggatttaaggttagtcctaattataaaatatgtaagaatatacaagaagttata
gagtttataaattattggacagatcatagagatgaactgaaattcgatatagatggtatg
gttataaaggttaatgatttaaagcaaagagatattcttggtaatacaactaaaagccct
cgttgggcaatagcttataaattccctgctgaaaagaagaagactaaagtattagatata
ataattcaggttggaagaacaggaaatcttacgccgacagctttacttgagcctgtacaa
attgcaggatctattgtatcaagagcaactcttcataatgaagattacataaaacaaaag
gatattaaaatcaaagatacggttataatacaaaaagcaggggatataatacctgaagtt
gtagaagtagttaaagatgaaagagatggtactcaaatagagtttgaaatgccggatgaa
tgtccggagtgtggttttgaaactagtagattggatggagaagctgctgttaagtgtacc
aatatatcttgtcctgctcaaataagacgaggaataatacattttgtatcaagaaatgct
atgaatatagatggtttaggagaacgtatagtagctcttttactgaaagaaaatttaata
aaggacatagctgatatttactatttgaaaaaagaagatctagttcctcttgagagaatg
ggagaaaagtcttcacaaaatttaatagaagctatacaaaagtctaaagaaaatgatttg
tcgaggttggtatttggccttggaataaagtacataggaagcaaaggtgctaaaatactt
gcaagtaattttgacgatgtatacaaaataatagaagctgagaaagaagatttaattaat
cttgaagaatttggagaggttatggctgaaagtgtagtagatttcttcaataatgataag
aatctagagcttatagaaaaatttaaagcagtagatgtcaaccttaaatcattaaaaacg
gagagcaatgaagttaaaatatttgaaggaatgaagattgttttaacgggaacacttgaa
aaatataagagaaatgatgttaaagaaataatagaaaaattcggtggaaaagtaactgga
agtgtaagtaaatcaacgcatgtagtgtttgctggaagggatgcaggctctaagcttgat
aaagcaaactctcttggaataaaggttatagatgagaatacatttgatgaaataataaat
ctatcctcaaaagaagaagttttaaaacatctagatatagagtaa
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