Terrabacter sp. C0L_2: U5C87_19645
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Entry
U5C87_19645 CDS
T09725
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ted
Terrabacter sp. C0L_2
Pathway
ted03030
DNA replication
ted03410
Base excision repair
ted03420
Nucleotide excision repair
ted03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ted00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
U5C87_19645 (ligA)
03410 Base excision repair
U5C87_19645 (ligA)
03420 Nucleotide excision repair
U5C87_19645 (ligA)
03430 Mismatch repair
U5C87_19645 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ted03032
]
U5C87_19645 (ligA)
03400 DNA repair and recombination proteins [BR:
ted03400
]
U5C87_19645 (ligA)
Enzymes [BR:
ted01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
U5C87_19645 (ligA)
DNA replication proteins [BR:
ted03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
U5C87_19645 (ligA)
DNA repair and recombination proteins [BR:
ted03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
U5C87_19645 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
U5C87_19645 (ligA)
MMR (mismatch excision repair)
DNA ligase
U5C87_19645 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
U5C87_19645 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
Auto_anti-p27
SH3_15
Imm71
Zn_ribbon_3
Motif
Other DBs
NCBI-ProteinID:
WVM96191
LinkDB
All DBs
Position
complement(4218727..4220874)
Genome browser
AA seq
715 aa
AA seq
DB search
MSESTVPAPVTDDVPTEIHQEWADLAEQAATAQFAYHVKDAPTISDGEYDAIMRRLTAIE
DEHPSLRTPESPTQNVGGASFATGFATVDHLERMLSLDNAFSFEELQTWAERVEREVGDG
AHFLTELKIDGLAINLLYENGRLVRALTRGDGRTGEDVTHNVRTIEGVPERLAGDDVPDL
VEVRGEVFFPTAAFADLNASLVEAGKAPFANPRNAAAGSLRQKDPKVTASRPLRMLVHGI
GARRGFDVERQSEAYAVLRAWGLPTSDEVRVLDDIAAVEQFVTYHGEHRHDRAHEIDGIV
VKVDEVTLQRQLGATSRAPRWAIAFKYPPEEVNTKLLDIRVNVGRTGRVTPYGVMEPVVV
AGSTVENATLHNAYEVERKGVLIGDTVVLRKAGDVIPEIVGPVVDLRDGTERAFVMPTEC
PACGTPLAPEKEGDKDIRCPNTRSCPSQLRERVFALASRGGLDIEALGWEGSIALLESGI
ITDEGDLFAPPEGSPHAGDYGITREKLSHVPLYTRAAKKTDPADAVVDGRILSAGGETLL
AELEKAKSQPLWRVVVALSIRHVGPTAARALATHFGSMDAIRAASTEELAQAEGVGGVIA
EAVTAWFAVDWHQEIVRKWADAGVRMADEVDESAPRTLEGKTVVVTGSLEGFSRDETKEA
IISRGGKASGSVSKKTDYVVIGANAGSKAAKAEELGLTILDETGFRRLLETGSPE
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgagagcaccgtccccgcgcccgtcaccgacgacgtcccgaccgagatccaccag
gagtgggccgacctcgccgagcaggccgcgacggcccagttcgcctaccacgtcaaggac
gcgccgacgatcagcgacggcgagtacgacgcgatcatgcgccggctcaccgcgatcgag
gacgagcacccgtcgctgcgcacgcccgagagcccgacgcagaacgtcgggggcgcctcg
ttcgcgaccggcttcgccaccgtcgaccacctcgagcggatgctgagcctcgacaacgcc
ttctccttcgaggagctgcagacctgggccgagcgcgtcgagcgcgaggtcggtgacggg
gcgcacttcctcaccgagctcaagatcgacgggctggccatcaacctgctctacgagaac
ggacgcctcgtgcgcgccctgacccgcggcgacgggcgcaccggtgaggacgtcacccac
aacgtccgcacgatcgagggcgtccccgagcggctggcgggcgacgacgtccccgacctc
gtcgaggtgcggggcgaggtcttcttcccgaccgccgccttcgccgacctcaacgcgagc
ctcgtcgaggcgggcaaggcgcccttcgccaacccgcgcaacgcggccgcgggctcgctg
cgccagaaggacccgaaggtcacggcgagccggccgctgcgcatgctcgtccacggcatc
ggcgcccgccgcggcttcgacgtcgagcgacagagcgaggcgtatgccgtcctgcgcgcc
tggggtctgccgacctccgacgaggtgcgcgtgctcgacgacatcgcggccgtcgagcag
ttcgtgacctaccacggcgaacaccggcacgaccgcgcgcacgagatcgacggcatcgtg
gtcaaggtcgacgaggtcacgctgcagcgccagctcggtgcgacctcgcgggcgccgcgg
tgggccatcgcgttcaagtacccgcccgaggaggtcaacaccaagctcctcgacatccgc
gtcaacgtcggccgcaccggtcgggtcacgccgtacggcgtgatggagccggtcgtcgtg
gccgggtcgaccgtcgagaacgcgacgctgcacaacgcgtacgaggtggagcgcaagggc
gtcctcatcggcgacaccgtcgtgctgcgcaaggccggcgacgtcatccccgagatcgtc
gggccggtcgtcgacctgcgcgacggcaccgagcgtgccttcgtcatgccgaccgagtgc
cccgcctgcggcacgccgctcgccccggagaaggagggcgacaaggacatccgctgcccc
aacacccgctcgtgcccgagccagctgcgcgagcgcgtcttcgccctcgcctcccgcggc
ggcctcgacatcgaggcgctgggctgggaggggtccatcgcgctgctcgagtccgggatc
atcaccgacgagggcgacctcttcgcaccacccgagggcagcccgcacgccggggactac
ggcatcacccgcgagaagctctcgcacgtcccgctctacacgcgggcggcgaagaagacc
gaccccgccgacgccgtcgtcgacgggcgcatcctctcggccggcggcgagacgctcctc
gccgagctcgagaaggccaagagccagccgctgtggcgggtcgtcgtcgcgctgtccatc
cgtcacgtgggcccgaccgctgcgcgggcgctcgcgacgcacttcggctccatggacgcg
atccgagcggcctcgaccgaggagctcgcgcaggccgagggagtcggaggcgtcatcgcc
gaggccgtcaccgcgtggttcgcggtcgactggcaccaggagatcgtccgcaagtgggcc
gatgccggcgtccggatggccgacgaggtggacgagtccgccccgcgcacgctcgagggc
aagaccgtcgtcgtcaccgggtccctcgagggcttctcccgcgacgagacgaaggaggcc
atcatcagccggggtggcaaggcgtccgggtcggtctcgaagaagaccgactacgtcgtc
atcggcgccaacgccggctccaaggcggccaaggccgaggagctcggcctgacgatcctc
gacgagaccggcttccgacgcctcctcgagaccgggtcgcccgagtga
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integrated database retrieval system
