Tessaracoccus palaemonis: KDB89_04720
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Entry
KDB89_04720 CDS
T08695
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tej
Tessaracoccus palaemonis
Pathway
tej03030
DNA replication
tej03410
Base excision repair
tej03420
Nucleotide excision repair
tej03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tej00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KDB89_04720 (ligA)
03410 Base excision repair
KDB89_04720 (ligA)
03420 Nucleotide excision repair
KDB89_04720 (ligA)
03430 Mismatch repair
KDB89_04720 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tej03032
]
KDB89_04720 (ligA)
03400 DNA repair and recombination proteins [BR:
tej03400
]
KDB89_04720 (ligA)
Enzymes [BR:
tej01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KDB89_04720 (ligA)
DNA replication proteins [BR:
tej03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KDB89_04720 (ligA)
DNA repair and recombination proteins [BR:
tej03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KDB89_04720 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KDB89_04720 (ligA)
MMR (mismatch excision repair)
DNA ligase
KDB89_04720 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KDB89_04720 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
DUF7575
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QXT63779
LinkDB
All DBs
Position
1066310..1068409
Genome browser
AA seq
699 aa
AA seq
DB search
MTDHTEAESGVTSPELRRAWTELNTRLTEAQEAYYGADQPTLSDAEYDAAMRELEDLEAA
HPSLVTPDSVTQRVGQARVTEFTPVEHRRRMLSLDNVFSAEELDGWLARTPASSYLVELK
IDGLAINLLYLGGRLAVAATRGDGRVGEDVTPNVATIAGIPHRLPAGAPSVLEVRGEVFF
PVAGFEKLNEDLVEVGRAPFANPRNAAAGSLRQKNPEVTASRPLRMLVHGIGAVEGIEFD
TQSGAYESLKGWGFPTTETYRVVGTGAEVQEFVAWHGEHRHDLSHEIDGIVVKVDDLAEQ
ERLGSTSRAPRWAIAYKYPPEEVNTKLLDIQVNVGRTGRVTPFGVMEPVFVSGSTVEMAT
LHNGFEVERKGVLIGDTVVLRKAGDVIPEIVAPVVALRDGTERPFVMPTHCPSCGTELRP
EKEGDKDIRCPNARSCPSQLRERIFGLASRGALDIEALGWEGAAALLDGRLLADEGGLFT
LTAADLLTTDFYTRAAKPAELADEATPKRDGRVLAAAGEKLLTNLEAAKTQPLWRVLVAL
SIRHVGPTAARSLAARFGSVGAIREASLEQLASAEGVGGVIAESVKGWFDVDWHDAIVAA
WAEAGVRMADEVDESTPRTLEGLTVVVTGSLDGFTRDGAKEAIISHGGKAAGSVSRNTDY
VVIGANAGSKAARAEQLGLPILDEAGFVRLLSEGPTGLD
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaccacaccgaggcagagtccggcgtcacgtcccccgagctgaggcgcgcctgg
accgagctgaacacccggctcaccgaggcgcaggaggcctactacggggcggaccagccg
acgctctcggacgccgagtacgacgccgccatgcgggagctggaggatctggaggccgcg
cacccgtcgctggtgactcccgactccgtcacgcagcgcgtcgggcaggccagggtcacg
gagttcactcccgtggagcaccgcaggcggatgctgagcctcgacaacgtgttcagcgcc
gaggagctcgacggctggctggcccgcacgcccgcctcgtcgtatctggtggagctgaag
atcgacgggctcgcgatcaatctgttgtacctcggcggcaggctcgcggtggccgccacc
cgcggcgacgggcgcgtcggggaggacgtgacgcccaacgtggcaacgatcgccggcatc
ccgcaccgcctccccgcgggggccccgtcggtgctggaggtgcgcggcgaggtgttcttc
cccgtcgcaggcttcgagaagctgaacgaggacctggtcgaggtggggcgggcgccattc
gccaacccccgaaacgccgcggccgggtcgctgaggcagaagaatcccgaggtcaccgcg
tcgcggccgctgcggatgctggtccacgggatcggcgccgtcgagggtatcgagttcgac
acgcagtcgggcgcctacgagtcgctgaagggttggggcttcccgacaaccgagacctac
cgggtcgtcgggacgggtgccgaggtgcaggagttcgtggcctggcacggcgagcaccgc
cacgacctcagccacgagatcgacggcatcgtcgtcaaggtcgacgacctcgcggagcag
gagcggctcggctccacgtcgcgggccccgcgctgggccatcgcgtacaagtacccgccg
gaggaggtgaacacgaagctcctcgacatccaggtcaacgtcggccggaccggccgggtg
acgccgttcggcgtgatggagcccgtgttcgtcagcggctcgaccgtcgagatggccacg
ctgcacaacggcttcgaggtcgagcgcaagggcgtgctgatcggcgacaccgtcgtccta
cggaaggccggcgacgtgatcccggagatcgtcgccccggtcgtcgcgctgcgcgacggc
accgagcggcccttcgtgatgccgacgcactgcccgtcctgcgggacggagctccgcccc
gagaaggagggcgacaaggacatccgctgcccgaacgcgcggtcctgccccagccagctg
cgcgagcggatcttcgggctcgcgtcccgcggcgccctcgacatcgaggcgctgggctgg
gagggcgcggcggcgctgctggacgggagactgctggccgacgagggtggcctgttcacc
ctgaccgccgccgacctgttgaccaccgacttctacacgcgggcggccaagccggccgag
ctcgccgatgaggccacgccgaagcgcgacggccgggtgctcgccgcggcgggggagaag
ctgctcaccaacctggaggcggcgaagacacagccgctctggcgtgtgctcgtcgcgctg
tccatccggcacgtcgggccgaccgcggcccgctcgctggccgcccgcttcgggtcggtc
ggcgcgatccgggaggcctcgctcgagcagctcgcctccgccgagggcgtcggcggggtc
atcgccgagtcggtcaagggttggttcgacgtcgactggcacgacgcgatcgtcgcggcc
tgggcagaggcgggggtgcggatggccgacgaggtcgacgagtcgacgccccggacgctc
gagggcctgaccgtcgtcgtgaccgggtcgctcgacggcttcacccgcgacggcgcgaag
gaggcgatcatctcccacggcggcaaggccgccggttcggtcagtaggaacaccgactac
gtcgtcatcggcgccaacgccgggtccaaggccgcgagggccgagcagctcggcctgccg
atcctagatgaggccggcttcgtccggctgctgtccgaggggccgactggactggactag
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integrated database retrieval system
