Tunturiibacter empetritectus: RBB75_09455
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Entry
RBB75_09455 CDS
T10212
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
temp Tunturiibacter empetritectus
Pathway
temp03030
DNA replication
temp03410
Base excision repair
temp03420
Nucleotide excision repair
temp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
temp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RBB75_09455 (ligA)
03410 Base excision repair
RBB75_09455 (ligA)
03420 Nucleotide excision repair
RBB75_09455 (ligA)
03430 Mismatch repair
RBB75_09455 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
temp03032
]
RBB75_09455 (ligA)
03400 DNA repair and recombination proteins [BR:
temp03400
]
RBB75_09455 (ligA)
Enzymes [BR:
temp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RBB75_09455 (ligA)
DNA replication proteins [BR:
temp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RBB75_09455 (ligA)
DNA repair and recombination proteins [BR:
temp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RBB75_09455 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RBB75_09455 (ligA)
MMR (mismatch excision repair)
DNA ligase
RBB75_09455 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RBB75_09455 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
HHH
5_3_exonuc
BRCT_2
MutL
RNA_pol_A_CTD
U_exon
Motif
Other DBs
NCBI-ProteinID:
XCB28532
UniProt:
A0AAU7ZI92
LinkDB
All DBs
Position
2276034..2278187
Genome browser
AA seq
717 aa
AA seq
DB search
MATALTPDQEIEELRDQLRHHEYLYYVEDAPELTDAQYDALMNRLKKLETQHPELVTADS
PSQRVGGKPKEGFAKMPHSRPMLSLDNAYNEEELRAWDQRVRDALPSTEAVRYVCELKLD
GLSLALQYGAGSGPESGPGSDRGGAAHLLRGLTRGDGSIGEDVTSNVRTIRSVPLSISAA
KLKAAGLPQSFEVRGEVVLPQAAFVKLNEERVAAGQAPAANPRNAAAGTIRTLEPNIVAQ
RRLDFYAYFLLKDGEFLLPQQSTALEALKTSGFRVNKYAKALKSIDEVARFIEDAEPLRD
SLGYEIDGVVIKVDATAQQRRLGFTGKAPRWAIAYKFAARAGITKLEGVLFQVGRTGKVT
PVAALAPVLIGGTTVSRATLHNADEIARLGVRIGDFVQVERGGDVIPKIVEVVEDKAHPR
GAEEIVFPRSCPVCASELQRIEGEVDWRCVNNSCPARVREELLHWSARGVMNIEGLGDAM
VAQLLGQSAELGGDGEVVTEAGAPVVVRKPLIHTIGDLYRLKREDLLGLERVGEKTADAL
LEEIKRSKKAGLARVLLGLGIRFVGERTAQLLAEHFGSMDELMMAASQEAEKASAALEAV
NEVGPKVAQAIAEFFAVEKNKDLVKDLAGLGLEMTAEKRVTTSTLEGLTFVLTGTLPNLT
RESAKERIESAGGRVSGSVSKKTSYVVAGEEAGSKLDKANSLGVKVLDEAGLLELLG
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgcgttgacaccggatcaagagatagaggagctgcgggatcagcttcgtcat
catgagtatctgtactacgtcgaagatgcgccggagctgacagatgcgcagtatgacgcg
ctgatgaaccggctgaagaagctcgagacccagcatccggagctggtgacggcggactcg
ccttcgcagcgcgtgggcggaaagccgaaggaaggttttgcgaagatgccgcactcgcgg
ccgatgctgtcgctggataacgcgtacaacgaggaggagctgcgggcgtgggatcagcgg
gtgcgggatgcgctgccgagtacggaggcggtgcggtatgtgtgcgagttgaagctggat
ggtctgtcgctggcgctgcagtatggggctggatctgggcctgaatctgggccgggatct
gacaggggcggggctgcgcatctgttgcgggggctgacgcgtggggatgggtcgatcggc
gaggatgttacgagcaatgtgcggacgatccggtcggtgccgttgagcatttcggcggcg
aagttgaaggcggcgggtttgccgcagagcttcgaggtgcggggcgaggtggtgttgccg
caggcggcgttcgtgaagctgaacgaagagcgtgtggcggcggggcaggctcccgcggcg
aatccgcggaatgctgcggcggggacgatacggacgctggagccaaatatcgtggcgcag
aggcggcttgatttttatgcttattttttgttaaaggatggggagtttctgttgccgcag
cagtcgactgcgctggaggctttgaagacgtcgggttttcgcgtgaacaagtatgcgaag
gcgctgaagagtatcgatgaggtggcgaggtttattgaggatgcggagccgctgcgcgat
tcgctggggtatgagattgatggcgttgtgatcaaggtggatgcgacggcgcagcagagg
cggctggggtttacggggaaggctccgcggtgggcgattgcgtataagtttgcggcgcgg
gcggggattacgaagctggaaggtgtgttgtttcaggtggggcggacggggaaggtgact
ccggtggcggcgcttgctcctgtgttgattggggggacgacggtgtcgcgggctacgctg
cacaatgcggatgagattgcacggctgggggttcgcattggggattttgtgcaggtggag
cggggcggggatgtgattccgaagatcgtagaggtggtggaggataaagcgcatccgcga
ggggcggaggagattgtgtttccgaggagctgcccggtttgcgcgagcgaactgcagcga
atcgagggcgaggttgattggcgatgcgtcaataactcttgtccggcgcgggttcgggag
gagttgctgcattggtcggcgcgtggggtgatgaacattgaggggctgggtgatgcgatg
gtggcgcagctgcttggccagagtgcggagctgggtggcgatggagaggtggtgacggag
gcgggtgcgccggtcgtggtgcgtaagccgctgatccatacgattggtgacttgtatcgg
ctgaagcgcgaggatctgctggggctggagcgagtgggcgagaagacggcggatgcgctg
ctggaagagattaaacggtcgaagaaggcggggctggcgcgcgtgctgctggggctgggg
attcggtttgtgggtgagcggacggcgcaactgctggcggagcacttcggctcgatggat
gagttgatgatggcggcgagtcaggaggcggagaaggcgagcgcggcgttagaagcggtg
aatgaggtgggaccgaaggtggcgcaggcgatcgcggagttcttcgcggtggagaagaac
aaggatctggtgaaggatcttgcggggctggggctggagatgacggcggagaagcgggtg
acgacctctacgctggaggggctgacgtttgtgttgacggggacgctgccgaatctgacg
cgggagtcggcgaaggagaggatcgaatcggcgggggggcgggtgtcggggagcgtgagt
aagaagacgagctatgtggtggcgggggaggaggcgggttcgaagctggataaggcgaac
tcgctgggggtgaaggtgctggatgaggcggggttgctggagttgctggggtaa
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