Tenacibaculum todarodis: LPB136_01500
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Entry
LPB136_01500 CDS
T04588
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ten
Tenacibaculum todarodis
Pathway
ten03030
DNA replication
ten03410
Base excision repair
ten03420
Nucleotide excision repair
ten03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ten00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LPB136_01500
03410 Base excision repair
LPB136_01500
03420 Nucleotide excision repair
LPB136_01500
03430 Mismatch repair
LPB136_01500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ten03032
]
LPB136_01500
03400 DNA repair and recombination proteins [BR:
ten03400
]
LPB136_01500
Enzymes [BR:
ten01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LPB136_01500
DNA replication proteins [BR:
ten03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LPB136_01500
DNA repair and recombination proteins [BR:
ten03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LPB136_01500
NER (nucleotide excision repair)
GGR (global genome repair) factors
LPB136_01500
MMR (mismatch excision repair)
DNA ligase
LPB136_01500
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LPB136_01500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
HNOB
AphA_like
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
APG64119
UniProt:
A0A1L3JG75
LinkDB
All DBs
Position
329936..331933
Genome browser
AA seq
665 aa
AA seq
DB search
MTIQQQIETLREDLRAHNYNYYVLDNATISDFDFDIKLKELEKLEEENPQFFDANSPTQR
VGGGITKNFETVTHKNRMYSLDNSYSKEDLLDWEKRIQKMLGTDDIEYTCELKYDGASIN
LTFENGKFVKAVTRGDGFQGDDVSKNIRTIKSIPLHLKNDFVTDFEMRGEIILPLGGFNK
MNEERVSNGEEEYKNPRNTASGSLKLQDSAEVAKRPLDCLLYQVVTSERKYKTHFESLEN
ARKVGFKVPKTITLAASIDAVFDFVNSWDSKRHNLPYETDGVVIKVNNLQQQEELGYTAK
APRWAIAYKFKAEQVSTVLHEITYQVGRTGAITPVANLEPVQLAGTVVKRASLHNADQIE
KLDIRINDTVFVEKGGEIIPKIIAVDLTKRPESSAPTKYATNCPECNTELVRTVGDAKHY
CPNEFGCAPQITGRIQHFISRKAMDIDGLGGETVDLLRKEGLIHNYADLYDLKVEQVIPL
ERMAEKSAQNMVDGIKKSTEIPFEKVLFALGIRFVGETVAKKLAKHFKSIDNLMAADLET
LISVDEIGERIAQSVIDFSQDLGNIQLIDRLKSYGVQLEVSAENLANQTDKLQGKVIVVS
GVFHQMSRNELKKAIEDNGGKVSSSISKKTSFIVAGDNMGPSKLTKAQDLGVEIITEQDF
INLIN
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgacaattcaacaacaaatagaaacgcttcgcgaagacttaagagcacataattataat
tattatgtgttggataatgcaacaatttccgatttcgattttgatataaaattaaaagaa
ttagaaaagttagaagaagaaaacccacagttttttgatgcaaattcaccaacacaaaga
gttggaggtggaatcaccaaaaactttgaaacggttacccacaaaaatcgaatgtattct
ttagacaattcatattctaaagaagatttgttagattgggaaaagcgtattcaaaaaatg
ttaggaacagacgatattgaatacacgtgcgaacttaaatacgatggagcttctataaac
ttaacgtttgaaaacggcaaatttgtaaaagccgtaactcgtggcgatggttttcaagga
gatgatgtttcaaaaaacattagaaccataaaatcgattcctttacatttaaaaaacgat
tttgtaacagactttgaaatgcgtggagaaattattttaccgttaggtggtttcaataaa
atgaacgaagaacgagtttcaaatggggaagaagaatataaaaatccaagaaataccgca
agcggaagcttaaaattacaagacagcgcagaggttgcaaaacgtccgttggattgtttg
ttgtatcaagtagtaacttcagaaagaaaatacaaaacacattttgaaagcttagaaaac
gcaagaaaagtaggttttaaagttccaaaaacaataacgttagcagcatcaattgatgca
gttttcgattttgtaaattcttgggattctaaaagacacaatttaccttatgaaacagac
ggagttgtaataaaagtaaataatttacaacaacaagaagagttaggatatacagcaaaa
gcgccacgttgggcaattgcatataagtttaaagcagaacaagtttcaacagttttacat
gaaattacctatcaagttggtagaactggagcaataactccagttgctaatttagaacca
gttcaattggctggaacggttgtaaaacgagcttcgttacacaatgccgatcaaattgaa
aagttggatattagaataaacgatactgtttttgtagaaaaaggaggagaaattattccg
aagataattgcagtagatttaactaaacgcccagaaagttctgcgccaacaaaatatgca
acaaattgtccagaatgtaataccgaattggtaagaacagtaggtgatgcaaaacattat
tgcccaaatgagtttggttgcgcgccacaaataacaggaagaatccagcattttatatca
agaaaagccatggatattgatggtttaggtggagaaacggtagatttattacgcaaagaa
ggattaatacataattatgccgatttatacgatttaaaagttgagcaagtaattccgtta
gaacgtatggcagagaagtctgcacagaatatggttgacggaataaaaaaatcaactgaa
attccgtttgaaaaagtgttatttgctttaggaatccgttttgtaggtgaaaccgttgct
aagaaattagcaaaacattttaagtctattgataacttaatggcggcggatttagaaact
ctaatttcagtagatgaaataggagaaagaattgcgcaaagtgttatcgatttttctcaa
gatttaggaaatattcaattaattgatagattaaaaagttacggagttcaattagaagtt
tccgcagaaaacttagcaaatcaaaccgataaattacaaggaaaagtaattgtggtctca
ggcgtttttcatcaaatgagtagaaatgaactcaaaaaagcaattgaagataatggagga
aaagtaagttcttccatctctaaaaaaacaagttttattgttgctggagataatatgggg
ccaagtaaattaacaaaagctcaagatttaggtgttgaaattattacggaacaagatttt
ataaacttaatcaattaa
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