Tepidanaerobacter acetatoxydans Re1: TepRe1_0613
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Entry
TepRe1_0613 CDS
T01495
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tep
Tepidanaerobacter acetatoxydans Re1
Pathway
tep03030
DNA replication
tep03410
Base excision repair
tep03420
Nucleotide excision repair
tep03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TepRe1_0613
03410 Base excision repair
TepRe1_0613
03420 Nucleotide excision repair
TepRe1_0613
03430 Mismatch repair
TepRe1_0613
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tep03032
]
TepRe1_0613
03400 DNA repair and recombination proteins [BR:
tep03400
]
TepRe1_0613
Enzymes [BR:
tep01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TepRe1_0613
DNA replication proteins [BR:
tep03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TepRe1_0613
DNA repair and recombination proteins [BR:
tep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TepRe1_0613
NER (nucleotide excision repair)
GGR (global genome repair) factors
TepRe1_0613
MMR (mismatch excision repair)
DNA ligase
TepRe1_0613
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TepRe1_0613
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
HHH_3
Zn_ribbon_PF0610
RNA_ligase
Zn_ribbon_PADR1
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AEE90801
UniProt:
F4LVV4
LinkDB
All DBs
Position
661823..663850
Genome browser
AA seq
675 aa
AA seq
DB search
MDIVQAENRIKELRESIDYHNYRYYVLDNPEITDAEYDKLMRELISLESQFPQLITPDSP
SQRVGGEPLEAFKKVTHREPMISLADAFSEEELRDFNRRVTENVGNQVEYVVELKIDGLA
VSLTYENGLLVTAATRGDGVVGEDVTQNVKTIKSVPLRLNIQKDKIPMVIEVRGEIYLSK
EGFKKLNEEREEMGLPTFANPRNAAAGSIRQLDSKITAKRPLSTFMYALGYVEGIEFNTH
LEVLEFYKACGFKVNPHIKSFNNFDDVIDYCMSWKEKRHSLPYEIDGMVIKVNSLHFQKI
LGSTAKTPRWAIAYKFPAEQKISVIEDIVVSVGRTGVLTPNAVLTPVQIAGSTVSRATLH
NEDYIKEKDIHIGDSVIVQKAGDIIPEVVAVIKEKRTGNEKEFKMPHRCPECGSEVIRLP
GEVAYRCTGVSCPAQIRRRIIHFASRDAMDIRGLGPAIVSLLLSENLIKDVSDIYFLKKE
ALIPLERMGEKSANNLIKAIENSKKQPLNRLVYALGIPLIGSKASLTLAQEFKSMDRLQN
ATYEELIKIPEIGDKMAESIIAFFKQEQTKALITRLKEAGVNMLYAKEEIGPKPLENLTF
VLTGALEKYSRSKAQELIENLGGKVTGSVSKKTDYVVVGKDPGSKYNKALELGVKILDEQ
QFEEMISNAQAETSI
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
ttggacatagttcaggccgaaaaccgcataaaagaactgagagaatcaattgattaccat
aattatcgctactatgtgctggataacccggaaattacagatgctgaatatgataaattg
atgagagaattgatttcccttgaaagtcagttcccacagcttataacacctgactcacct
tcccaacgtgtaggcggcgaaccgctggaagcctttaaaaaggttactcatcgagaaccc
atgataagccttgccgatgcttttagtgaggaagaactcagagattttaaccgccgtgtt
acagaaaatgttgggaatcaggtagaatacgtcgtagaacttaaaattgatggcctggct
gtttcactcacttatgaaaatggtttattggttacggctgctacacgaggtgatggtgta
gtaggtgaagatgtaacccaaaatgtaaaaacaattaaaagtgttccactgcgcttgaat
atacaaaaggataagattcccatggtaatagaggttcgcggagaaatatatctgtctaag
gaaggatttaaaaagctaaatgaagagcgggaggaaatgggacttcctacatttgcaaac
ccgcgcaatgctgctgccggctctataagacagcttgactcgaaaattactgcaaaaaga
cctctgtctacctttatgtatgcattggggtatgtagaaggaattgagtttaatacacat
ttagaagtgctcgaattttataaagcttgcggatttaaggtaaatccacatataaagtca
tttaataactttgatgatgtgatagattattgcatgagctggaaagaaaaaaggcactca
ctgccctatgaaattgacggaatggtaataaaggtaaattcacttcattttcaaaaaata
ttgggttctactgccaaaacccctcgctgggctattgcttataaatttcctgcagaacaa
aaaatttcagttatcgaagacatagttgtaagtgtgggaagaacaggggttttaactcca
aatgccgttttaactcctgttcagatagcaggttctaccgttagcagagcgacacttcac
aacgaggattatataaaagaaaaagatattcatattggcgacagcgtcattgtacaaaaa
gcaggagatattattccggaagttgttgcagtgattaaagaaaagcggacaggtaatgaa
aaagaatttaagatgcctcatcgctgcccggaatgcggctctgaagttatcagacttcca
ggcgaagtggcatatcgctgtaccggagtgtcatgtcctgcacaaataagacggaggata
atccactttgcctcaagagatgccatggatataaggggattagggcctgcgattgtatcc
ctgcttttatcggaaaaccttattaaggatgtttcagatatatattttcttaaaaaagaa
gcattgataccactggaaagaatgggcgaaaaatcagcaaataatcttatcaaagcaatc
gaaaacagcaaaaaacagccactaaacagattagtatatgcgttgggcataccgcttatc
ggttctaaagccagcctgactcttgctcaagagtttaaaagcatggacagactgcagaat
gccacttatgaggaactcataaaaatacctgaaatcggggataagatggcagaaagcata
atcgcctttttcaaacaggaacaaacaaaagcattaataacgcgattaaaagaagccgga
gtaaatatgctatatgcaaaagaagaaatcggtcctaaacccttggaaaatctcacgttt
gtcttgacaggagctttagaaaaatacagtcgctccaaggcccaagagcttattgaaaat
ttaggcggcaaagttaccggcagtgtcagtaaaaagacggattatgtagtggtaggaaaa
gatccgggctctaaatacaataaagcactagagttaggtgtaaaaattttagatgaacaa
caatttgaagaaatgatttcaaatgctcaagcagaaacgagcatctaa
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