Tachysurus fulvidraco (yellow catfish): 113639102
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Entry
113639102 CDS
T08119
Symbol
lsm3
Name
(RefSeq) snRNA-associated Sm-like protein LSm3 isoform X2
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03018
RNA degradation
tfd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113639102 (lsm3)
09123 Folding, sorting and degradation
03018 RNA degradation
113639102 (lsm3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfd03019
]
113639102 (lsm3)
03041 Spliceosome [BR:
tfd03041
]
113639102 (lsm3)
Messenger RNA biogenesis [BR:
tfd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113639102 (lsm3)
mRNA degradation factors
5'-3' decay
Lsm complex
113639102 (lsm3)
Spliceosome [BR:
tfd03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
113639102 (lsm3)
Complex C
U2 snRNP components
113639102 (lsm3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
TIG_SUH
vATP-synt_E
DUF150_C
Peptidase_M16_M
Motif
Other DBs
NCBI-GeneID:
113639102
NCBI-ProteinID:
XP_026996591
LinkDB
All DBs
Position
2:complement(7480477..7484099)
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AA seq
102 aa
AA seq
DB search
MADDVEQQPTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTVEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgacgtagaacagcaaccgaccacaaacacggtcgaggaaccactggatctc
attcggttgagtttggatgagcgaatttatgtgaagatgcggaacgaccgtgagcttcgt
ggaagacttcatgcctatgaccaacatttgaacatgatcctcggggatgttgaggagacc
gtgacgacagtggagatcgatgaggagacgtatgaagaaatttacaagtcgacgaagagg
aacattcccatgctgtttgtccgtggagatggagtcgtgctagttgctccgccgctgaga
gtcggctaa
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