Tachysurus fulvidraco (yellow catfish): 113641163
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Entry
113641163 CDS
T08119
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113641163 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tfd03041
]
113641163 (eftud2)
Spliceosome [BR:
tfd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
113641163 (eftud2)
Complex C
U5 SnRNP specific factors
113641163 (eftud2)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
113641163
NCBI-ProteinID:
XP_047657065
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All DBs
Position
15:complement(17334071..17350539)
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AA seq
971 aa
AA seq
DB search
METELYDEFGNYIGPDLDSDEDEDVEAEDRDAAEADEDEEDEDQVDGEEEGGGMEVVLHE
DKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVRTKQFTLTEQELPATVYDMEFLAD
LMDSSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDADLRYTDILFTEQERGVGI
KSTPVTMVLPDSRGKSYLFNIMDTPGHVNFSDEVTAGIRLSDGIVLFIDAAEGVMLNTER
LIKHVVQERLAITICINKIDRLILELKLPPTDAYYKLRHIVDEVNAMLSTYTTDESLVVS
PLLGNVCFASSQYSTCFTLGSFAKIYSDTYGDINYNEFAKRLWGDIYFNPKTRKFTKKAP
NSNSQRSFVEFVLEPLYKILSQVVGDVDTSLPRVLDELGIHLTKEELKLNIRPLLRLVCN
RFFGEFTGFVDMCVQHIPSPHRGARAKIEHSYTGGLDSDLAEAMTECDSDGPLMCHTTKM
YSTDDGVQFHAFGRVLSGTLQAGQPVKVLGENYTLEDEEDSQICTIGRLWISVARYQIEV
NRVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELP
KMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT
FCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTK
YDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCD
EPIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPAD
CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSVF
HHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLEL
AKQDVVLNYPM
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggagacagagctgtacgacgaattcgggaactacatcgggccggatctggactccgat
gaggatgaggacgtcgaggcagaggacagagatgctgccgaggcggatgaggatgaagag
gacgaagaccaggttgacggcgaagaggagggcggtggcatggaggtcgttttgcacgag
gataaaaagtattatccgactgcagaggaagtctatgggcccgaggtggagaccatcgtt
caagaggaggacacgcaaccgcttactgagcccattataaagcctgtaaggacgaagcag
ttcactcttacggagcaggagctgccagctacggtttatgacatggagtttctggctgat
ttgatggacagctctgagctgattagaaacgtcacactgtgtggtcatttacaccacggc
aagacatgctttgtggactgcttgattgaacagactcatccagaaatccgtaagagagac
gacgcagacctgcgctacacagatattcttttcaccgaacaagagagaggagtcggcatt
aagagcacaccagtgacgatggtactccctgactcaagagggaaatcctacctgtttaac
atcatggacactccaggtcacgtgaacttctcggacgaggtaacagccggaatcaggctt
tcagacgggatcgtgctgttcatcgacgccgccgagggggtgatgctgaacaccgagcgt
ctgataaagcacgtcgtgcaggagcgtctggccatcaccatctgcattaataaaatagac
cggctgatcttggagctgaaactccctcccaccgacgcctactacaaactgcgccacatt
gtcgacgaggtcaacgccatgctcagcacgtatacaactgatgagtctctggtagtgtct
cctcttctgggcaatgtgtgtttcgcctcctcacagtacagcacctgctttactctcggg
tcatttgccaagatctactctgatacttatggtgacataaactacaacgagtttgcaaag
agactctggggagacatctacttcaaccccaagacgaggaagttcactaaaaaagcccct
aacagtaactcgcagcgcagcttcgtcgagttcgtgcttgagccgctctacaagatcctc
tcgcaggtggtcggggatgtggacacatcactgccccgtgtattggatgaattggggatc
cacctgaccaaagaggagctgaaactcaatatccggcctctgctgagactcgtctgcaac
cgcttctttggcgaattcacaggttttgtagacatgtgtgtgcagcacatcccgtctcct
cataggggcgccagagccaagatcgagcacagctacaccggaggactggactcggatctg
gctgaggccatgacggagtgtgactctgatggtccgttaatgtgtcacaccactaagatg
tacagcacagacgacggagtgcagttccacgcctttggtcgggttctgagcgggacgctg
caggcggggcagccggtgaaagttctgggagagaattacactctggaggatgaagaggac
tcacagatctgtaccatcggacgcctctggatctccgtagccaggtatcagattgaggtg
aatcgtgtccctgctggcaattgggtgctaattgaaggctgtgaccagcccattgtgaaa
acagccaccatcacagagcctcggggaaatgaagaggctcagatcttcaggccactgaag
ttcaacactgcttcggtcatcaaaattgctgtggagcctgtcaatccgtctgagctgccc
aagatgttggatggactgagaaaagtaaataagagctatccatcccttacaaccaaggtg
gaggaatctggagagcatgttatcctgggtacaggtgaactatacctggactgcgtaatg
cacgacctgagaaagatgtactccgagatcgacatcaaggtagctgaccctgtagtgacc
ttttgcgaaaccgtggtggaaacatcttctctcaagtgctttgctgaaacacccaataaa
aagaacaagatcacgatgattgcagagcctctggagaaaggccttgctgaagacatagag
aacgaggtggtgcagattacatggaacagaaagaagttaggagagttcttccagaccaag
tatgactgggatttgctggctgctcgttctatctgggcttttggacccgacaccacagga
cccaacatcttagtagatgacacgctgccctctgaggtggacaaagccctccttggctca
gtgaaggacagcatcgttcagggcttccagtggggaactagagaaggtcccctgtgtgat
gaacccattcgcaacgtgaagtttaagatcctggacgcggtcatcgctcaggagccgtta
cacagaggaggtggccaggtcatccctaccgcacgaagagtcgtgtattcagccttcctc
atggctacacccaggctgatggagccctattattttgtggaggttcaggctccggctgat
tgtgtgtctgctgtttacactgtactggcacgcaggagaggtcatgtgacgcaggatgca
ccaattcccggttctcccctgtacacaatcaaggctttcattcctgcaatcgactcgttt
gggttcgagaccgatctgcgtacacacacacagggacaggccttcgcactgagtgtgttc
catcactggcagatcgttcctggtgatcccctggacaagagcatcgtgattcggccatta
gagcctcagcccgctcctcatctagccagagagttcatgatcaaaactcgtagacgcaag
ggtttgagcgaagacgtcagcatcagcaagttcttcgacgatcctatgttgttggagctg
gccaagcaggacgtggtgttgaactaccccatgtga
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