Tachysurus fulvidraco (yellow catfish): 113642408
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Entry
113642408 CDS
T08119
Symbol
kdm2aa
Name
(RefSeq) lysine (K)-specific demethylase 2Aa isoform X3
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
113642408 (kdm2aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tfd03000
]
113642408 (kdm2aa)
04121 Ubiquitin system [BR:
tfd04121
]
113642408 (kdm2aa)
03036 Chromosome and associated proteins [BR:
tfd03036
]
113642408 (kdm2aa)
Enzymes [BR:
tfd01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
113642408 (kdm2aa)
Transcription factors [BR:
tfd03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
113642408 (kdm2aa)
Ubiquitin system [BR:
tfd04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
113642408 (kdm2aa)
Chromosome and associated proteins [BR:
tfd03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
113642408 (kdm2aa)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
113642408 (kdm2aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
JmjC
F-box
PHD
Cupin_8
zf-RING_15
BUD22
Motif
Other DBs
NCBI-GeneID:
113642408
NCBI-ProteinID:
XP_027001655
LinkDB
All DBs
Position
4:22577533..22596515
Genome browser
AA seq
1289 aa
AA seq
DB search
MEEATASDGTSSSGRAKRSGTRRRYHDDGISDDEIEGKRTFDLEEKVYSDRFGFDRIKRM
EGKDFTFEFIQRGGLRDPIIFERPDGLGIKMPGSDFTVNDVKMYVGSRRMIDVMDVATQK
DTEMSMAQWRRYYETPPSQREKLYNVISLEFSHTKLENLVRRPATVDIIDWVDNMWPRHL
KERQRDSTNSILEMQYPKVQKYCLMSVQGCYTDFHIDFGGTSVWYHILRGCKVFWLIPPT
PQNLELYENWVLSGKQGDIFLGDRATDCQRIELKQGFTFIIPSGWIHAVYTPLDTLVFGG
NFLHSFNIPMQLNICSIEDRTRVAAKFRYPFFYEMCWYVLERYVYSLTNTSYLIPEFQKH
SLGIGLKREFSSSEALNGHVKDEDDPPSPPTRPGMKVHMTPFELEGLSNLLGKLESLPSH
KKCVPAGIHNAPALLHDMRALLNEHTNDNPKLSYTGRPIVKWPKRPSWYQPPPPPAPVGR
PKLATTPILPRPTKPASAMSALRRRRVRCKRCEACRRPECGECNFCRDMKKFGGPGKLKQ
TCVLRQCLAPGLPLSAVCEICEEGNQDPGEELMECSNCAQIAHPGCLKVAGDGLVNKDLP
SCWECPKCVLGKDTDSESSGSGDDLTTQDGSGGLRGGAWHGVGRPPSSLSHGPLQKQVAA
PEQRLRKRSKLEGNKLLKRKSSSLDHRVAKIYRRHGMDSGSDDEDGEGRRRLSLHSRGAI
SARRGFGSSRRGLLRGSSHRGGRGMTTNSSSLKMRRGLGARGERGGRVRLRGGSKMQRRR
YETEDDDDDDDDDDDDDDDEEEEEDESEEERHMGRHEREHRSRRRRRRGEDDDEDEDDES
EEQDFDGEDEEMEDLDDGAEEDDDEGENHSDSEPDPPVLFVADLNDELLNGSYLTVTLQR
PSKAKRDPGSIVPKLEAAMSPCTPGNADLLQRKSLNKFRQKNGSTVSTGNGLSQPKASQA
LGRHTRHRSLNLDGRASPSSTSSRSSISPPPPPPLISTAGFSPPSLLTHPSFRDVGNEPG
CEKEVWVSVFRYLSRTDLAVCMRVCKAWYKWFYDKRLWTRIDFSRCRSLSGQAVSAIIKR
QPITLDLSWTPVSKKQITCLIHYLPGLKDLIMSGCSSSTLLGLSSQSLPCLRTLDLSWAE
SIKDAQLRDLLAPSGQLRSENRSRLKGVLTLRLSGLDLSDSTLKLIIKHMPLLRRLDLSH
CPVLTDQSISLLAAIGSNTRSTLREITLAGCNKLTDACLNYMKRLSALTLLDLRGCKGIT
RHGCENFISDLSYCTFFCLTEDKLIQRIS
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagcgactgcaagcgatgggacgtcaagctccggtcgagcaaagcggtcagga
acgcggcgacgttaccatgacgacgggatctctgacgatgaaattgaggggaaaaggaca
tttgacctggaggagaaagtgtacagtgatcgcttcggttttgatagaatcaaacgcatg
gaaggaaaagattttacatttgagttcatccagagaggcgggctaagagatccaattatc
tttgaacgaccagatggacttggaatcaaaatgccaggttcagacttcactgtgaacgat
gtgaagatgtatgtgggcagtcggcgaatgattgacgtgatggatgtggccactcagaag
gatacagagatgtctatggcacagtggaggcgatactacgagaccccgccttctcagaga
gagaagctgtacaatgtcatcagcttggagtttagccacaccaaactagaaaatttagtc
aggagacctgcaacggtggatataatagattgggtggataatatgtggccacgacactta
aaggaaaggcaaagagactccaccaactccatccttgaaatgcagtaccctaaagtgcaa
aaatactgtctgatgagcgtgcagggctgttacacagacttccacatagactttggaggc
acatctgtgtggtaccacatactgcgaggatgcaaggtattttggttgattcctccgaca
ccacagaacctggagctctatgagaactgggtgctgtctggaaagcaaggcgacatcttc
cttggagacagggctacagattgtcaacggattgagctcaagcagggctttacgtttatt
atcccatcaggttggattcatgcagtgtatactcctttggacactcttgtgtttggtgga
aatttcctacatagttttaacatccccatgcagcttaatatctgcagcattgaagacagg
acacgggtggctgctaaatttcgctacccttttttttatgagatgtgttggtatgtgctg
gaacggtatgtgtacagtctgaccaacacctcctacctcatccctgagtttcagaaacac
tctctaggcatcggccttaagcgagaattttctagttctgaagcattgaatggtcatgta
aaggatgaagatgatcctccctctcctccaactcggccagggatgaaagttcacatgact
ccttttgagctggaaggtttatcgaatttgctcggaaaactagaatctcttccctcacac
aaaaaatgtgtccctgcaggaatacacaatgcacctgccttgctccatgacatgcgggca
ttacttaatgaacacaccaatgataaccctaaactttcatacactggaagacccattgtt
aaatggccaaagaggccctcctggtaccagcctcccccgccccctgccccagtaggtcgt
cccaaattagccaccaccccaatcctccctcgtccaacaaagccagcatcagcaatgtca
gcactgcggcggcggcgcgtgcgctgtaagcgttgtgaggcatgtcgaaggccagaatgt
ggcgagtgcaatttctgcagagatatgaagaaatttggtggccctggcaaactgaaacag
acatgtgtccttcgtcagtgtcttgctcctggcttacctctctcagcggtatgtgaaatt
tgtgaagaagggaaccaggatcctggagaagaactcatggaatgctccaactgtgcacaa
attgctcatcctggctgcttaaaggtggcaggtgatggtttagttaacaaagatctgccc
agttgctgggaatgtcccaaatgtgtcctgggcaaagacacggactctgagtcatcgggc
agcggtgatgacctcacgactcaggatgggtcgggggggctgaggggcggggcgtggcac
ggggtcgggcggcccccttcctctctgtcacatgggccgctacagaaacaagtggcggcc
ccagagcagcggctcaggaagaggagcaaattggaaggaaacaaattgcttaaacgcaag
tcatcctctcttgatcatcgtgtggctaagatctatcgcagacatggaatggattcaggc
agtgatgatgaggatggagaaggaagaaggcggctctctctccactcaaggggtgcaata
tctgctcgccgtggatttgggtccagtaggcggggcctgttaagaggctcatcacatcga
gggggcagagggatgaccacaaattcctcctccctgaaaatgaggcgcggacttggtgca
aggggtgagcggggaggtcgtgttcgtttacgaggggggtccaaaatgcagcggaggcgt
tatgaaacagaggacgacgacgacgatgacgacgacgatgatgatgacgatgatgatgag
gaggaggaagaggatgaaagtgaagaagaaagacacatgggcaggcatgaaagggaacac
cgttcacgacggcggcgccgcagaggtgaagatgatgacgaagatgaggacgatgaaagt
gaagaacaagactttgatggagaggatgaagagatggaggacctggatgatggagcggag
gaagatgatgatgagggtgaaaaccattcagactcagaacctgaccctcctgttctgttt
gtcgcagacttaaatgatgaactgttaaatggttcttatctgactgtcacattacagcgg
ccatcaaaggccaaacgggatcctgggtctattgtacccaaactggaggcagccatgtct
ccttgcactcctggtaatgctgatttactccagcgcaaatcgcttaacaaatttcgccag
aaaaacggcagcactgtctccactggaaatggtctatcacaacccaaagccagtcaagca
ttaggccgacatacacgccacagaagtttgaaccttgatggtagagcatcaccttcctcc
acctcctctcgctcttccatttctcctcctcctcctcctcccctgatatccactgctggc
ttctcccctccttccctcctcactcatccctcattccgggatgtagggaacgagccaggg
tgtgagaaggaggtgtgggtgtcagtgtttcggtacctgagccgaacagatctggctgtg
tgcatgcgggtttgcaaggcctggtataaatggttttatgataagcgtttgtggactcga
atagatttcagtagatgtcgctctctcagtggtcaggctgtgtccgctattattaaacgg
cagcctatcacacttgacctgtcctggacacctgtttccaagaaacaaatcacctgtctt
atccactatctcccaggactgaaggatctgatcatgtcaggctgttcttcatcaactctt
ttgggcttaagttctcagagcctcccatgtctccgcacgctggacctgtcctgggctgaa
agcatcaaagacgctcagctcagagacctcctcgcgccatcaggtcaactgcgtagtgaa
aatcgcagcaggctgaaaggtgtgttaacgttgcggctatctggtctggatttgagtgac
tcgacactgaagctgataattaaacacatgccgttgctgaggaggttagacctgtcgcat
tgccctgtccttacagaccagtccatcagcctgcttgcagctattggctctaacacacgc
agcactctgagagagatcacccttgcaggttgtaataagttaacagatgcgtgcctaaat
tatatgaagcgcctctcggctctcactctcctggacctgcggggctgcaagggtatcacg
cgacatggctgtgaaaacttcatttctgacctttcctactgcaccttcttttgtctgact
gaggataaactcatccagaggatatcttaa
DBGET
integrated database retrieval system
