Tachysurus fulvidraco (yellow catfish): 113647749
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Entry
113647749 CDS
T08119
Symbol
kdm2ab
Name
(RefSeq) lysine-specific demethylase 2A isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
113647749 (kdm2ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tfd03000
]
113647749 (kdm2ab)
04121 Ubiquitin system [BR:
tfd04121
]
113647749 (kdm2ab)
03036 Chromosome and associated proteins [BR:
tfd03036
]
113647749 (kdm2ab)
Enzymes [BR:
tfd01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
113647749 (kdm2ab)
Transcription factors [BR:
tfd03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
113647749 (kdm2ab)
Ubiquitin system [BR:
tfd04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
113647749 (kdm2ab)
Chromosome and associated proteins [BR:
tfd03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
113647749 (kdm2ab)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
113647749 (kdm2ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
JmjC
Cupin_8
F-box
DUF7885
LRR_4
LRR_Zer-1
Motif
Other DBs
NCBI-GeneID:
113647749
NCBI-ProteinID:
XP_027010456
LinkDB
All DBs
Position
17:5077201..5088716
Genome browser
AA seq
1268 aa
AA seq
DB search
MEETRYSKRLRTGTRRRYQDDGISDDEIEGKTTFDLDEKLESSYFNSDLVKIMDGKDFTF
EYIQREGLRDPIIFTKADGLGIQMPDSDFSVSDVKLFVGSRRMIDVMDVSTQRAMEMSMS
QWRRYYETPASEREKLYNVISLEFSHTKLEHLVKRPASVDLIDWVDNMWPRHLKERQRDS
TNVITDMQYPKVQKYCLMSVKGCFTDFHVDFGGTSVWYHILRGRKVFWLIPPTPHNLELY
ENWVLSGKQGDIFLGDKATACQRIELKQGYTFMIPSGWIHAVYTPEDTLVFGGNFLHSFN
IPMQLNIYSVEDRTRVPAKFRYPFYYEMCWYVLERYLYCLTNISHLTPEFQRHSLGIGLK
KDDFAKPNNEDGDEKLEVKEGDEEEEEQLSPPARPGVKVHLTPFELEGLWQLLHKLEELP
THKKCVPAGIRNAPALLCDIRTLLEEHANDDPKLSYTGKPIVTWPKRPSWYMPLPPPPSA
MYRPRASGSAPTIAPVPRPTKPASSISALRKRRVRCKRCKACRRSECGDCPYCRDMKKFG
GPGRLKKSCILRQCLAPALPLTAVCAICKEGSQEDSEGTQTTQTLMECSECGQITHRECI
TVPGEGVINNDLPSCWECPKCVQDKNTESSSSNSEEEYKSTVTTSSPTSGPPAKRAYREG
IGVSALRLGRRGQPSPSPSSLPLTRSRRQPPPSQRILLQHQQSRKRAGALERQHRKRVKL
ERNKLFQSTRPSVSVSPKLLRQRSLQRGSMIRAGLGRGMSRRRVVPSYQGREVRLRSEAS
GGALRGRTEREEDGDDHDKEEENVKTERRENGLGGKENRPQRYGGRPTEEENREAQQNEE
RETEAEEDGEQTRSDSAVPGDETRDQRSCVTVTLQPSRGRRDPSTIVPKLEANVSSVSHT
QSNNDFQGKSLLRPPLRGDSRRVDKTQSHSNSHVTRSQLQSPTLTRGASKHANVSQSLSS
SSRESHHNTTRERNGKNVRPERGKPPATTSFTSPEQNGTSEPGWGRLVWVSVFRYLTRTE
LCVCMAVCKSWYKWGCDKRLWTHISLSRCQSISPQALSGIIKRQPVTLDMSWAKISKKQL
TWLINRLPGLKDLVLSGCNWTSVSALSSPSCPLLRSLDLRWADGVKDAQIRELLSPPGSN
NRSQLRNMQCLRLCGLEVTEATLRLILRHMPQLTRLELSHCPLTDNALNLLTAVGSSTRN
TLTHLNLAGCSRLTDHCLVYLQRLSCLSVLDLRSCKGISRQACEKFISELSVNALYCLSD
DKLIQRIS
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atggaggaaacccgctacagcaaacgcctgcggacaggaacacgtaggcgctaccaggac
gatggcatctcggatgatgagatcgaggggaagacgacttttgacttggatgaaaagctt
gaaagcagctactttaattcagatttggtcaaaatcatggatggaaaagactttactttt
gagtacatccagcgggagggcctccgggaccccataatctttactaaagcagacggcctt
ggcattcagatgcccgattcagacttcagtgtgagtgacgtgaaattgtttgttggcagt
cgaaggatgattgacgtgatggatgtaagcactcaaagggcgatggagatgtccatgagc
cagtggaggaggtattatgaaactccagcctcagaaagggagaaactgtacaacgtcatc
agtcttgagttcagccatacgaaactggagcatcttgtcaagagacctgcctcagttgat
ctgattgactgggtggataacatgtggccacggcacctgaaggagagacaaagagactcc
accaacgtgatcactgacatgcagtatcccaaagtacaaaagtactgtctgatgagtgtg
aagggctgctttacagacttccatgttgactttggtggcacatcagtctggtatcacatc
ctgaggggccgcaaggtgttctggctgatcccacccacaccacacaacctggagctctat
gagaactgggtgttgtcgggaaaacagggtgacatcttcctcggggacaaagccacagcc
tgtcagcgcattgaactaaaacagggttacacttttatgatcccctcaggttggatccat
gcagtatacactcctgaggatactctggtgtttggagggaatttcctgcacagttttaac
attccgatgcagctgaacatctacagtgttgaggaccgcacaagggtcccagctaagttt
cgttacccgttctattacgagatgtgttggtatgtgttggagcgttacctgtactgtctg
accaacatatctcatctaacaccagagtttcaaagacactcactgggcatcgggctgaaa
aaagatgactttgctaaaccgaataacgaggatggcgatgaaaaattggaggttaaagaa
ggtgacgaggaggaagaagaacaactctctcctccggcccgacctggagtgaaggttcac
ctgaccccatttgagttggagggactttggcagctgctgcacaaactggaggagttgccc
acccacaagaagtgtgtacctgcagggatcagaaatgctccagcacttctctgtgacatt
cgtactctgctagaagaacatgccaacgatgatccaaaattgtcttacactggaaaaccc
attgtcacatggcctaaaaggccctcgtggtatatgccactccctccccccccatctgca
atgtatcgaccacgcgcttcaggttcggcccccacaatagctccggtgccacggccaact
aagcctgcatcttctatctctgctctgaggaagcggcgtgtgcgttgtaagcgctgcaag
gcctgcagacgctccgagtgtggagattgcccctactgcagggacatgaagaagttcggc
ggcccgggtcgacttaaaaagtcctgcattctcagacagtgcctggctccggcgctgcct
ctgactgccgtctgtgccatatgcaaagaagggagccaggaagactccgaaggcacccaa
accactcaaacactcatggagtgctctgaatgtggtcaaattacacaccgagaatgtata
acggtcccaggggagggtgtgatcaataatgatcttcccagttgctgggagtgtcccaaa
tgtgtccaggataagaatacagagtcttccagcagcaactcagaagaagaatataaaagc
actgttacaactagctcgccaacctccggtcctcctgctaagcgggcgtacagagaaggc
attggggtgagtgctctgcgtttggggcgcaggggtcagccttccccgtcaccctcttcc
ctgcctctgactcgctcccggcgccaacctccaccctctcagagaatcctgctgcagcac
caacagagtcgcaaaagagctggggcactggagcgacagcaccggaagagggtcaaatta
gagagaaacaaactcttccagtctacacggccgtctgtctccgtttctccaaagcttttg
cgccagcggagcttgcagagagggagcatgatcagggcaggactcggaaggggcatgtcc
cgcaggagagtcgtgccatcttatcagggaagagaagtacggttaagaagcgaagcaagt
ggcggggctctgaggggaaggacggagagagaagaggatggcgatgaccatgacaaggag
gaagagaatgttaagactgaaagaagagagaacgggctgggaggtaaagagaatcggcca
cagagatatggaggaaggccgacggaagaggagaacagggaagctcaacagaacgaagag
cgggaaaccgaggcggaggaggacggagagcagactcgctcagactctgcggtgcccggc
gatgagaccagagatcagaggtcatgtgtgaccgtgactttgcagccttcacgaggcaga
cgggaccccagcactattgtccccaagctagaagcgaatgtatcatccgtaagccacacc
caaagcaacaacgacttccagggcaagtccttgctacgcccaccgcttcgaggtgattcg
cgccgtgttgataaaactcaatcccactcaaactcgcatgtgaccaggtcacaactccaa
tcccccacccttaccaggggcgcttccaaacacgctaatgtcagtcagagtttaagctct
agctccagagagtcccatcacaacacgacacgagagagaaatgggaagaacgtgcgaccg
gaaagagggaagcctcctgccacaacttctttcacatcacctgagcagaatggcacaagt
gaaccaggctggggcaggctggtgtgggtgtctgtcttccgctacctgactcgaactgag
ctgtgtgtctgcatggctgtgtgcaagagctggtacaaatgggggtgtgataagcgcttg
tggacacacatcagtttgagccgctgccagtccattagcccacaggccctttccggcatc
atcaagcgccagccggttacactggacatgtcctgggccaagatatccaagaaacagctt
acttggctcatcaaccgtttaccagggttaaaagatttggtgctttcagggtgtaactgg
acatccgtctccgctctgagctctcccagctgtcctttactgcgttcactagacctgcgc
tgggcagatggagtcaaagatgcacagatcagagagcttctcagcccaccaggaagtaat
aaccgttcacagctgagaaacatgcagtgcttgaggctatgtggtctggaggtgaccgaa
gccacactgaggctgatcctcaggcacatgccccagctgacgaggctggagctctcacac
tgccctctgaccgacaacgctctcaacctccttactgctgtgggctcatccacacgcaac
acactcacacacctcaacctagcaggttgtagccgtctgacagaccactgtctagtgtac
ctgcaacgtttgtcctgtctctctgtgctggacctgcgcagctgtaaaggaatctcccga
caagcctgcgagaaattcatctctgagctgtcagtcaatgctctctactgcctatcggac
gataaacttatccagagaatatcctag
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integrated database retrieval system
