Tachysurus fulvidraco (yellow catfish): 113655652 Help Entry 113655652         CDS       T08119                                  Symbol thbs1b Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism tfd  Tachysurus fulvidraco (yellow catfish) Pathway tfd04115   p53 signaling pathway tfd04145   Phagocytosis tfd04148   Efferocytosis tfd04350   TGF-beta signaling pathway tfd04510   Focal adhesion tfd04512   ECM-receptor interaction tfd04518   Integrin signaling tfd04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:tfd00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     113655652 (thbs1b)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     113655652 (thbs1b)    04518 Integrin signaling     113655652 (thbs1b)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagocytosis     113655652 (thbs1b)    04148 Efferocytosis     113655652 (thbs1b)   09143 Cell growth and death    04115 p53 signaling pathway     113655652 (thbs1b)   09144 Cellular community - eukaryotes    04510 Focal adhesion     113655652 (thbs1b)   09142 Cell motility    04820 Cytoskeleton in muscle cells     113655652 (thbs1b)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:tfd04131]     113655652 (thbs1b)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:tfd00536]     113655652 (thbs1b) Membrane trafficking [BR:tfd04131]  Endocytosis   Phagocytosis    Opsonins     113655652 (thbs1b) Glycosaminoglycan binding proteins [BR:tfd00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    113655652 (thbs1b) SSDB OrthologParalogGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC VWC2L_2nd TSP1_CFP_C EGF_3 Laminin_G_3 cEGF TSP1_ADAMTS EGF Laminin_G_2 Motif Other DBs NCBI-GeneID:  113655652 NCBI-ProteinID:  XP_027022107 LinkDB All DBs Position 16:complement(10419020..10428263) Genome browser AA seq 1170 aa AA seqDB search MKLTGIFLLVMLWSCESAREAESRDDNSVYDLFELVQVPKKNHGVMLVKGDDPYSPAYKI LNPDLIPPVPESDFRDLVDSVQAERGFLFLVNFKQARRTRGSLFTVEKRDGSGTLLEVVS NGKANTLDIVFATENKQQVVSIEEAELATGQWKNITLFVQEDRVHVYVGCEEINNAELDA SIHNVLTPETPSVADLRIGKGAVNDRFMGVLQNVRFVFGTTLDAILRNKGCQNSVSDIIT LHNPVNGSSPAIRTDFTGHKTKDLQLICGYTCDEMTSMFKELKTLGVMVKDLTNKLRKVT NENNELGGNIIIRAGVCIHNGIVHKNKEEWTVDDCTECTCQNSATVCRKISCPLLPCANA TVPDGECCPRCGTPNDSAEDGWSPWSEWTHCSVSCGRGTQQRGRSCDRINNICEGTSVQT RECYLQECDKRFKQDGNWSHWSPWSSCSVTCGSGVITRIRLCNSPTPQMGGRECQGQGRQ TEKCEKSPCPISGGWGPWSPWDTCSVTCGGGVQNRKRLCNSPPPKYGGKDCVGDGKGTQL CNKNACPIDGCLSNPCFAGAQCTSFPDGSWKCGKCPAGYTGNGINCKDIDECKEVPDACF VFNGVHRCENTVPGYNCLPCPSRYSGPQPFGRGVEDAASKKQLCTPRNPCLDGSHDCNKN ARCNYLGHFADPMFRCECKPGYAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCPN LPNSGQEDYDKDGIGDACDDDDDDDGIPDDRDNCPFVFNPRQYDYDRDDVGDRCDNCPYN SNPDQTDTDNNGEGDACAVDIDGDGILNEKDNCPYLYNVDQKDTDMDGVGDQCDNCPLEH NPDQLDTDSDLVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDYDDDN DGIPDEKDNCRLVFNPDQLDTDGDGRGDACKDDFDQDNVLDIYDVCPENFDISETDFRKF QMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNSVDFSGTFFINTERDD DYAGFVFGYQSSSRFYVVMWKQITQTYWSSTPTKAQGYSGLSIKVVNSTTGPGEHLRNAL WHTGDTPGQVRTLWHDPKNVGWKDFTAYRWHLNHRPRTGHIRVVMYEGKKIMADSGRIYD KTYAGGRLGLFVFSQEMVYFSDLKYECRDA NT seq 3513 nt NT seq  +upstreamnt  +downstreamnt atgaagctaacaggaatatttttattagtgatgctttggagctgcgagagcgcaagggag gcagaaagcagagacgacaacagcgtttacgatctgtttgagctcgttcaagtgcctaag aagaaccacggggtcatgctcgtgaagggcgacgacccttacagtcccgcctacaagatc ctgaacccggacttgatcccgccggtgcccgaaagtgatttccgcgacctggtggactcg gtgcaggcggagcgcggcttcttattcttggtcaacttcaagcaggcgcggcgcaccagg ggctccctgttcaccgtggagaagcgcgacggctccggcaccctgctcgaggtggtctct aatggcaaagccaacacgctggacatcgttttcgccacggaaaacaagcagcaagtggtg tctattgaggaagcggaactggccacgggccaatggaagaacattacgctcttcgtgcaa gaggacagggtgcacgtctatgttggatgtgaggagatcaacaacgccgagctggacgcg tctatccacaacgtgctcactcctgagacaccaagcgtcgccgacctgaggataggcaag ggagccgttaatgacagattcatgggtgtgctccaaaacgtccgattcgtttttggaact acgctggatgcaatactgagaaataaaggatgtcaaaactctgtttctgacattataact ctacataatccagttaatggatccagcccagctatcaggactgattttactggtcacaaa acaaaagatttgcagttgatttgtggctatacctgtgacgaaatgaccagcatgtttaag gaactaaagacccttggtgtaatggtcaaagatctgaccaacaagctccgcaaagtgaca aatgaaaacaatgagcttggtggaaacataattatccgggctggtgtctgtatccataat ggcatagtgcataaaaacaaggaagaatggacagtggatgactgcactgaatgtacttgc caaaactcagcgacggtgtgccgtaagatttcttgtcccctgcttccttgtgccaatgca accgttcctgatggtgaatgctgcccccgatgtggaactcccaatgactctgctgaggat ggctggtccccctggtctgaatggactcattgttctgtgtcctgtggaaggggtactcag cagcgtggccgctcctgtgaccgcatcaataacatctgtgagggcacatctgtgcaaacg agagaatgttaccttcaggagtgtgacaagcgctttaagcaagatggcaactggagccac tggtcaccatggtcatcttgctctgttacctgtggatctggagttatcacacgcattcgt ctctgtaactcacctactccccagatgggaggaagagagtgtcagggtcaaggcagacag actgaaaaatgtgagaagtcaccatgcccaatcagtggaggttgggggccatggtcacct tgggatacctgttcagtaacctgtggaggcggtgtccaaaatagaaaacgtctttgcaat agtccaccacccaagtacggtggaaaagactgtgttggtgatggaaagggaactcagctg tgcaacaaaaatgcatgccctattgatggatgtctgtccaatccttgctttgctggagct cagtgtacaagttttccagatgggtcttggaaatgtggaaaatgcccagcaggttacact ggcaatggcattaactgtaaagacattgatgagtgtaaggaggttccggatgcttgcttc gtatttaatggcgtccacagatgtgaaaatacagtacctggctacaactgcctgccatgt ccttcacgctacagtggtccacagccatttggacgtggagtggaggatgccgcttcaaag aaacagttgtgcacacctcgtaatccctgccttgatggaagccatgactgcaataagaac gcccgctgcaactacctgggtcattttgcagaccccatgttccgctgtgagtgcaagccc ggctatgctgggaatggacacatctgtggagaggacacagatctggatggttggccaaat gctgaccttgtgtgtgtggagaatgctacctatcactgcaagaaggacaactgcccaaac cttccaaattctggtcaagaggactatgacaaggatggaattggtgatgcttgtgatgac gatgatgatgatgatggcattcccgatgacagggacaattgcccattcgttttcaatcca agacagtatgactatgaccgagatgatgttggtgaccgctgtgacaactgcccatacaat agcaaccctgaccaaactgacacagacaataacggtgaaggggatgcatgtgctgtggac attgatggagatggtattctgaatgaaaaggataactgtccttatctgtacaatgtggat cagaaagatactgatatggatggtgttggtgaccagtgtgataactgccccctggagcac aatcctgaccagcttgatacagactctgaccttgtaggagataaatgtgacagcaatcag gacattgacgaagatggtcatcaaaacaacttggacaactgcccttatattccaaatgct aaccaagctgaccatgacaaagatggcaaaggagatgcttgtgattatgatgatgacaat gatggcatcccagatgaaaaagataactgtaggctagtttttaacccagatcagctggac actgatggtgatggacgtggtgatgcttgtaaggatgactttgaccaggacaatgttcta gacatctatgatgtgtgcccagagaactttgacatcagtgagactgacttccgcaaattc cagatggtgcctctggatcccaagggcacttcccaaattgatcctaactgggtagtccgt caccaagggaaagagttggttcagacagttaactgtgacccaggcattgctgttggattt gatgagtttaactcagtggacttcagtgggacctttttcatcaatacagagagagatgat gactatgcaggatttgtgtttggttaccagtccagctcccgcttctatgtggtgatgtgg aaacaaataactcagacctactggtccagcacacccaccaaggcacagggttactcaggg ctgtcaatcaaagtggttaactcaactacaggaccaggtgaacacctaaggaatgccctt tggcacactggggatactcctggacaggtgcgcactctgtggcatgaccctaagaatgtt ggttggaaagactttactgcttacagatggcacctgaatcacagaccaagaacaggacac ataagggttgttatgtacgaaggaaagaagatcatggcagattctggaagaatttatgac aaaacatatgcaggtggacggctaggtctttttgtcttctcacaagagatggtatacttc tcagatcttaaatatgaatgcagagatgcataa

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