Thermosipho ferrireducens: JYK00_00245
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Entry
JYK00_00245 CDS
T07656
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tfe
Thermosipho ferrireducens
Pathway
tfe03030
DNA replication
tfe03410
Base excision repair
tfe03420
Nucleotide excision repair
tfe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JYK00_00245 (ligA)
03410 Base excision repair
JYK00_00245 (ligA)
03420 Nucleotide excision repair
JYK00_00245 (ligA)
03430 Mismatch repair
JYK00_00245 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tfe03032
]
JYK00_00245 (ligA)
03400 DNA repair and recombination proteins [BR:
tfe03400
]
JYK00_00245 (ligA)
Enzymes [BR:
tfe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JYK00_00245 (ligA)
DNA replication proteins [BR:
tfe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JYK00_00245 (ligA)
DNA repair and recombination proteins [BR:
tfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JYK00_00245 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JYK00_00245 (ligA)
MMR (mismatch excision repair)
DNA ligase
JYK00_00245 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JYK00_00245 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
BRCT_2
DNA_ligase_ZBD
HHH_3
HHH_8
5_3_exonuc
UPF0758_N
RNA_ligase
DUF6309
zf-tcix
BAR_3
Motif
Other DBs
NCBI-ProteinID:
QTA38017
LinkDB
All DBs
Position
50039..52030
Genome browser
AA seq
663 aa
AA seq
DB search
MEKQKIREEIEKLRKEIEYHNYRYYVLADPIISDEEYDKLMKKLIKLEKKYPEFSSPDSP
TQKVGGRVIDGFKTVTHSIPMLSLDNTYTAEEVVNFDNRIKKLLKKEVEYVCELKIDGVS
IALRYENGSLVQAISRGNGTEGDDITENVKKIKSIPLRLFKPLTIEVRGEIYMPVSEFVR
YNKQREDEGLPPFANPRNAAAGTLRQLDSSVVANRNLDSFIYYIVHPEYYNLDSQWEALN
FLKQIGLKVNPHSKLCKTINDVINFWKEWTEKRHSLGYWVDGVVVKVNNFAEQNSLGTTA
KSPKWAIAFKFPAIQARTRIISITYQVGRTGVITPVAELEPVTLEGTIVKRASLHNFDYI
KEKDIKVGDHVFVEKAGGIIPQVVSVIKELRTGSEKEVIPPTSCPVCGGNVGKLTENEVA
LRCMNPHCPQKLKRHLEIFVSRSAFDISGIGEKMAEKIVDAKLINDVSDIFYLTPFDLAQ
LSGVGQKTIANVLKQIEKAKKTPLHKVIVGLGIPLVGEKTAKILAEKFENIDKLSNASYE
ELTSIDGIGPELAKSIVDYFRNEKTREIIEKLKNAGVEMKNIAKTKNEKFSGMTFVITGT
LKNYTRNQIKELIESLGGKVSESVSSKTTYLVVGEKPGSKYQKAKQLGVKILTEEEFMKI
MKT
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggagaaacaaaaaataagagaagaaatagaaaagttaagaaaagaaatcgaatatcat
aattatagatactatgtattggctgacccaataataagtgatgaggaatatgataaactt
atgaaaaagttgataaaattagaaaaaaaatatccagaattttcttccccagattctccc
actcaaaaagttgggggaagagttatagatggattcaaaacagtgacacactccatacct
atgttaagtctcgacaacacctacaccgcagaggaagtagtaaattttgataacagaata
aaaaagcttctaaaaaaggaagttgaatacgtctgtgagttaaagatagacggagtttct
atcgctcttagatatgaaaatggaagtcttgtgcaggcaataagcagagggaatggtaca
gaaggtgatgatataacagaaaatgttaagaaaataaagtcaattcctcttagattgttt
aaacctcttacaattgaagtacgaggagaaatttatatgccagtctcagaatttgttcga
tataacaagcaacgtgaagatgagggacttcccccttttgcaaatccaagaaatgccgct
gcaggaactttaagacagctggattcctcagtagtagcaaatcgaaaccttgattctttt
atatattatattgttcatccagaatactataatttagattcacaatgggaagcactaaat
tttttaaaacaaattggactaaaagttaatccgcattcaaaactatgcaaaactatcaac
gatgttattaacttctggaaagaatggacagaaaaacgacattctctgggatattgggtt
gatggtgttgttgtaaaagtaaacaactttgcagaacaaaatagtctgggaacaaccgca
aaatctccaaagtgggctattgcatttaaatttccggcaattcaagccagaacacgaatt
atttcaataacctaccaggttgggcgcactggagttatcacacctgttgccgaacttgaa
ccagtaactctggaaggaactatagtaaaaagagcttcccttcacaactttgattatata
aaagaaaaagacataaaagtaggagaccatgtctttgttgaaaaagctggtggaataata
ccacaagttgtaagtgtaatcaaagaattacgaactggctcagaaaaagaagtaattcca
ccaacatcctgtcccgtgtgcggaggtaatgtgggaaaactcacagaaaatgaagttgct
ttaagatgtatgaatccacattgtccgcaaaagcttaaacggcatcttgaaatatttgtt
tcaagatccgcgtttgatatttccgggattggcgaaaaaatggcagaaaagatcgttgat
gcaaaattgataaatgatgtctctgatatattttacttaacaccatttgaccttgcacaa
ctaagcggggttgggcaaaaaacaattgcaaacgttttaaaacaaattgaaaaagctaaa
aaaactcccttgcataaagtaatcgtaggcttaggaattcctttagttggcgaaaaaaca
gctaagattctcgctgaaaagttcgaaaatattgacaaactttcaaatgcttcatatgaa
gaacttaccagtattgatggaataggtccggaactggctaaaagtatcgtagattatttt
agaaatgaaaaaaccagagaaatcattgaaaaattgaaaaatgcaggagtagaaatgaaa
aatatagctaaaactaaaaatgaaaaattttctggtatgacctttgttattacaggaacg
ctgaaaaattatacgagaaaccagattaaagaacttattgaaagtcttggtggaaaggtc
tctgaatctgtatcatcaaaaacaacttatttagttgtaggtgaaaaacctggttcaaaa
tatcaaaaagccaaacaacttggcgttaaaatacttaccgaagaagaatttatgaaaatt
atgaaaacctag
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