Tessaracoccus flavus: RPIT_08925
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Entry
RPIT_08925 CDS
T04688
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tfl
Tessaracoccus flavus
Pathway
tfl03030
DNA replication
tfl03410
Base excision repair
tfl03420
Nucleotide excision repair
tfl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RPIT_08925
03410 Base excision repair
RPIT_08925
03420 Nucleotide excision repair
RPIT_08925
03430 Mismatch repair
RPIT_08925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tfl03032
]
RPIT_08925
03400 DNA repair and recombination proteins [BR:
tfl03400
]
RPIT_08925
Enzymes [BR:
tfl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RPIT_08925
DNA replication proteins [BR:
tfl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RPIT_08925
DNA repair and recombination proteins [BR:
tfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RPIT_08925
NER (nucleotide excision repair)
GGR (global genome repair) factors
RPIT_08925
MMR (mismatch excision repair)
DNA ligase
RPIT_08925
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RPIT_08925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
DUF7575
Motif
Other DBs
NCBI-ProteinID:
AQP44897
UniProt:
A0A1Q2CFM5
LinkDB
All DBs
Position
complement(1919236..1921320)
Genome browser
AA seq
694 aa
AA seq
DB search
MTEHPSAESGVTSPELRRRWTELNALLTEAQEAYYGADAPTMDDAAYDAAMLELIALEEA
HPSLVTPDSVTQRVGQAQITDFSPVEHRVRMLSLDNVFSDEELEAWLARTPAERYLCELK
IDGLAVNLLYLDGRLSVAATRGDSRVGEDVTPNVRTISGVPHRLNGDAPAVLEVRGEVFL
PLVGFEELNASLVAAGKSPFANPRNAAAGSLRQKNPAISAERPLRMLVHGVGAVEGAAFE
SQSEAYERLREWGLPVPDTFRIVETPGDVAQFVRYYGEHRHGLLHEIDGIVIKVDDMSEQ
RRLGSTSRAPRWAIAFKYPPEEVNTKLLDIQVNVGRTGRVTPFGVMEPIFVSGSTVEMAT
LHNGFEVKRKGLLIGDTVVLRKAGDVIPEIVAPVAALRDGSEREFVMPTHCPSCGTELAP
EKEGDKDIRCPNSRSCPSQLRERLFSLASRSGFDIEALGWEGAGALLSSGVLTDESGLFD
LTAEDLLSTDFYTRSGKDGRTLSANGEKLLANLEAAKEQPLWRVLVALSIRHVGPTAARS
LAQRFGTLDAIRSASLEELASADGVGTVIAESVLSWFEVDWHRSIVEAWAAAGVRMADEV
DESMPRTLEGLTVVVTGSLEGFTRDGAKEAILARGGKAAGSVSKNTDFVVVGASAGSKAA
KAEQLGLPILDEEGFVRLLAEGPAAVSSGSGSED
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgactgagcatcccagtgcggagtccggcgtcacgtcaccggagctgcgtcgtcggtgg
acggaactcaacgcgctcctgaccgaggcccaggaggcgtactacggggccgacgcacca
acgatggacgacgctgcctatgacgcggcaatgctggagctgattgctctggaagaggcg
cacccgtcactggtaactcccgactcggtgacgcaacgggtcgggcaggcgcagatcacg
gacttcagccccgtggagcacagggttcggatgctgagcctcgacaacgtcttcagcgac
gaggagttggaggcgtggctggcccggacgccggccgagcgctacctctgtgagctgaag
atcgacgggctggcggtcaacctgctctacctcgacggccgcctcagcgtcgcggccacg
cgcggcgattctcgggtcggggaggacgtgacccccaacgtccggacgatctcaggcgta
ccgcaccgattgaacggcgacgctccggccgtgttggaggtgcgcggcgaagtgttccta
ccgctcgtgggattcgaggagctcaacgcctccctcgttgccgccggcaagtcacccttt
gccaacccgcgcaacgccgccgcgggctcgctccggcagaagaaccccgccatcagcgcg
gagcgtcccctgcggatgctggtccacggggtgggcgcagtggagggcgcggcgttcgag
agccagagcgaggcctatgaacggctgcgggagtgggggctcccggtgccggatacgttc
cggatcgtcgaaacgccgggggacgtcgcccagttcgtgcgttactacggcgagcacagg
cacggtctcctgcacgagatcgacggcatcgtcatcaaggttgacgacatgagcgagcag
cgccggctcggctccacgtcgcgcgcgccccgctgggcgatcgccttcaagtacccgccc
gaggaggtcaacaccaaactcctggacatccaggtcaacgtgggtcgcacgggccgggtc
accccgttcggggtgatggagccgatcttcgtcagcggctcgacggtcgagatggcgact
ctccacaatggcttcgaagtcaagcgcaaggggctgctcatcggggacacagtggtgctc
cgcaaggcgggtgacgtgatcccggagatcgtcgcgccggtggcggcactgcgtgacggc
tcggagcgtgagttcgtgatgccgacccactgcccctcgtgcgggaccgagctcgcccct
gagaaggagggcgacaaggacatccgctgcccgaactcccgctcctgtccgagtcagctc
cgcgaaagactgttcagcctggcctcccgcagcggcttcgacatcgaggcactgggctgg
gagggcgccggagcgttgctctcctccggcgtcctcaccgacgagtcgggactgttcgat
ctcaccgccgaggatctgctgagcaccgacttctacacccggtcgggcaaagacggacgc
acactctccgccaacggtgagaagctgctggccaacctggaggcggcgaaggaacaaccc
ctgtggcgcgtgctcgtcgccctctcgatccggcacgtcgggccgaccgccgcccggtcg
ctggcccagcggttcggcactctcgacgcgatccgctcagcctccctggaggaactcgcg
tcggccgacggcgtgggcaccgtcatcgcagagtcggtgctcagctggttcgaggtggac
tggcaccgttccatcgtcgaggcctgggcagcagctggggtccgcatggccgacgaggtc
gacgagtcgatgccgcggacgttggaggggctgaccgtggtcgtcaccgggtcgctcgag
ggcttcacgcgcgacggcgcgaaggaggcgatcctcgccagagggggcaaggccgccggg
tcggtcagcaagaacacggacttcgtcgtggtcggagccagcgccggctcgaaggctgcc
aaggcagagcagctcggtctgccgatcctcgacgaggagggtttcgtccgactgctcgcc
gaaggccccgcggctgtgtcgtcgggcagcggctcagaagattga
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