Tepidiforma flava: O0235_02980
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Entry
O0235_02980 CDS
T08993
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tfla
Tepidiforma flava
Pathway
tfla03030
DNA replication
tfla03410
Base excision repair
tfla03420
Nucleotide excision repair
tfla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tfla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
O0235_02980 (ligA)
03410 Base excision repair
O0235_02980 (ligA)
03420 Nucleotide excision repair
O0235_02980 (ligA)
03430 Mismatch repair
O0235_02980 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tfla03032
]
O0235_02980 (ligA)
03400 DNA repair and recombination proteins [BR:
tfla03400
]
O0235_02980 (ligA)
Enzymes [BR:
tfla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
O0235_02980 (ligA)
DNA replication proteins [BR:
tfla03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
O0235_02980 (ligA)
DNA repair and recombination proteins [BR:
tfla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
O0235_02980 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
O0235_02980 (ligA)
MMR (mismatch excision repair)
DNA ligase
O0235_02980 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
O0235_02980 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
Auto_anti-p27
UPF0758_N
PTCB-BRCT
RUBY_RBDX
DUF4796_N
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
WBL36536
UniProt:
A0ABY7MA07
LinkDB
All DBs
Position
450809..452878
Genome browser
AA seq
689 aa
AA seq
DB search
MREVPKTQYEARLRSEELRSLINYHNRLYYELNQPEISDEVYDDLMNELRAIEAAYPELI
TPDSPTQRVGGAPLPTFEVVEHRLPLLSLSNCFSEEELRAWHRRAAERLGSDAFALVTEP
KIDGLAIALVYERGRFVQGATRGDGYHGENVTENLRTIPTIPKQLRGSYPERFEVRGEVY
MPRAGFEALNEAIGEENLRREKEGKRPLPLYANPRNAAAGAVRQKDPSVTASRPLAMFTY
QLGWCEGSHPESHYEILGWLREMGFNVNPEARLHAGLDDVLPRVAWWGQERERLEYDIDG
VVIKIDDTRAWDRLGAVGREPRWATAYKFPPQQRTTKLLDIQVNVGRTGVLTPFAVLEPV
VVGGARVSLATLHNEGDIRRKDIRIGDTVIVQRAGEVIPQVVGPVVQLRTGEEREFTMPE
RCPVCGTPVSRDPDQAAVYCPNASCPAQQIRLIEHFGSRAAMDIEGLGEKMAIQLYQQGL
VRNVADLYDLTVEQLRPLWKSGTKTAEALVRNIQASKGRPLPNVLFALGIRHVGFETARL
LAEHIGSLAGLLDVKADELQQVEGIGPVVAASIESWVQRPENRAIVERLVAAGVNPTFEK
PAGGAGPLEGLTIVVTGRLERMSRGEAEDAIRARGGKVGSSVTTATDFLVVGADAGSKLA
KAEKLGTRQLTEEEFLALLERGPAALSDA
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgaggtgccgaagacccagtacgaggcgcggctgcggagcgaggagctgcggtcg
ctcatcaactatcacaaccgcctgtactacgagctgaaccagccggaaatctccgacgag
gtctacgacgacctgatgaacgagctccgggcgatcgaggcggcgtacccggagctgatt
acgccggactcgccgacgcagcgggtgggcggcgcgccgctgccgacgttcgaggtggtg
gagcaccggctgccgctcctgagcctttcgaactgcttcagcgaggaggagctgcgggcg
tggcaccggcgggcggcggaacggctgggctcggacgcgttcgcgctggtaaccgagccg
aagatcgacgggctggcgattgcgctggtgtacgagcgcgggcggttcgtgcagggcgcg
acgcggggggacggctaccacggggagaacgtgacggagaacctccggacgattccgacg
atcccgaagcagctgcgggggagctacccggagcggttcgaagtgcggggggaggtgtac
atgccgcgggccgggttcgaggcgctcaacgaggcgatcggggaggagaacctgcgccgg
gagaaggaggggaagcggcccctcccgctgtacgcgaacccgcgaaatgcggcggcgggg
gcggtgcggcagaaggacccttcggtgacggcgtcgcggccgctggcgatgttcacctac
cagctggggtggtgcgaggggagccacccggagagccactacgaaatcctcggctggctg
cgcgagatggggttcaacgtgaaccccgaggcgcgcctccatgccggcctcgacgacgtg
ctgccgcgcgtcgcctggtggggacaggagcgggagcggctcgagtacgacatcgacggg
gtggtcatcaagatcgacgacacgcgggcgtgggaccggctcggcgccgtgggacgggag
ccgcgctgggcgacggcctacaagttcccgccgcagcagcggacgaccaagctgctggac
atccaggtgaacgtgggccggaccggggtgctgacgccgttcgcggtgctggagcccgtc
gtggtcggcggcgcgcgggtgtcgctggccacgctccacaacgaaggcgacatccggcgg
aaggacatccgcatcggcgacactgtcatcgtgcagcgggcgggcgaggtcatcccgcag
gtggtcgggccggtggtgcagctgcggacgggcgaggagcgggagttcacgatgccggag
cggtgccccgtgtgcgggacgccggtctcgcgggacccggaccaggcggcagtgtactgc
ccgaacgcgagctgcccggcgcagcagattcggctcatcgagcacttcgggagccgggcg
gcgatggacatcgaagggctgggcgagaagatggccatccagctctaccagcaggggctg
gtgcggaacgtggccgacctctacgacctgacggtggagcagctgcggccgctctggaaa
tcggggacgaagacggcggaagcgctggtgcgcaacatccaggcgagcaaggggcggccg
ctgccgaacgtgctgttcgcgctgggcattcggcacgtcgggttcgaaaccgcgcggctg
ctggccgagcacatcggcagcctcgcggggctgctcgatgtgaaggcagacgagctgcag
caggtcgaaggcatcgggccggtcgtcgcggcgagcatcgagagctgggtgcagcggccg
gagaaccgggcgatcgtcgagcggctggtggcggccggggtgaaccccacgttcgaaaag
ccggcgggaggcgccggcccgctcgaagggctgaccatcgtcgtgaccgggcggctggag
cggatgagccggggcgaggcggaagacgcgatccgggcgcgcggcgggaaggtgggcagc
tccgtgacgacggcgacggattttctggtggtgggcgccgacgcggggtcgaagctggcg
aaggcggagaagctggggacgcggcagctgacggaggaggagttcctggcgctgctggag
cgggggcccgcggcactttcagacgcttag
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integrated database retrieval system
