Tannerella forsythia: BFO_0211
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Entry
BFO_0211 CDS
T01682
Symbol
ligA
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tfo
Tannerella forsythia
Pathway
tfo03030
DNA replication
tfo03410
Base excision repair
tfo03420
Nucleotide excision repair
tfo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tfo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BFO_0211 (ligA)
03410 Base excision repair
BFO_0211 (ligA)
03420 Nucleotide excision repair
BFO_0211 (ligA)
03430 Mismatch repair
BFO_0211 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tfo03032
]
BFO_0211 (ligA)
03400 DNA repair and recombination proteins [BR:
tfo03400
]
BFO_0211 (ligA)
Enzymes [BR:
tfo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BFO_0211 (ligA)
DNA replication proteins [BR:
tfo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BFO_0211 (ligA)
DNA repair and recombination proteins [BR:
tfo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BFO_0211 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BFO_0211 (ligA)
MMR (mismatch excision repair)
DNA ligase
BFO_0211 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BFO_0211 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
BRCT_2
RNA_ligase
Cytidylate_kin2
EAD10
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AEW21253
UniProt:
G8UIY3
LinkDB
All DBs
Position
238012..240111
Genome browser
AA seq
699 aa
AA seq
DB search
MSGYSRFDFYPFVYKNLGFFIYVCNLVSFTEFMNGIENKIKSLREELEQHNYRYYVLSMP
TISDKQYDEMMKELQFLEEQHPAFFDPHSPTQRVGSDLSKEFEQVPHRYPMLSLGNTYSR
EEVRDFYERTARTLNEPFEIVAELKYDGTSISLIYEDGRLMQAVTRGDGIRGDDVTANVR
TIRSIPLKLHGKDYPQRFEIRGEIVLPWTEFERLNKEREAQEEPLFANPRNAASGTLKQQ
NPQIVAARRLDAYLYYMLGEELPADEHYGNLQKARTWGFKVSEELRVCRNLQDINDYIAY
WDVGRKNLPVATDGIVLKVNSLKQQRFLGHTAKSPRWAISYKFQAERAETRLTSVSYQVG
RTGVVTPVANLDPVQLAGTVVKRASLHNADIIAGLDLHIGDRVYVEKGGEIIPKIVGVNT
EARPMLMGDKVTFIHHCPECRTALIRPEGEAAHYCPNERTCPPQVKGKIEHFVTRKAMNI
NMGPETVEDLYHAGYVRNVADLYTLRTVDLLRLERWAEKSAQNLMDSLEASKQVPFERVL
YGLGIRYVGETVAKRLAYAYGSMEHLEQASLESLIQTDEIGERIAQSVIDFFADERNRNM
IDRLKEYGLQMALQEDAPATRSEKLNGLAFVISGTFTRHSRDEYKAMIEQNGGKNTGSIS
GKTDYLLAGANMGPAKLAKAEKMGIKIINEEEFLNILAE
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
gtgtccggatattcccgatttgatttttatccgttcgtgtataaaaatctcggctttttt
atctatgtttgcaacttggtatcgtttacggagttcatgaacgggatagaaaataaaata
aaatcgttaagggaagagctggagcagcacaactacaggtattacgtgctttccatgccg
acgatttccgacaagcagtacgatgaaatgatgaaggagttgcagtttctcgaagagcaa
catcccgcgtttttcgatccccattcgcccacccaacgtgtaggaagcgatttatcgaaa
gaatttgaacaggtgccccatcgctatccgatgctctcgttgggaaatacgtattcgaga
gaagaagttcgggatttttatgaacggacagcccgaacactcaacgaacctttcgagatc
gtcgccgaactgaaatacgacggtacttccatctcactgatttacgaagacggccggttg
atgcaggccgttacccgtggcgacggaatacgtggtgacgatgtgacggccaatgtgaga
acgatccggtcgatcccgctgaaactgcatggaaaagattatccccaacggttcgagata
cgcggagagattgttcttccgtggacggaattcgagcgactgaacaaagagcgcgaggcg
caggaagagccgttgtttgccaatccgcgcaatgcggcgtccggcacgttgaaacagcaa
aaccctcagatcgtagcggcccgacggcttgatgcgtatctctattatatgctgggcgag
gaattacccgccgacgagcattatgggaatttgcaaaaggcacgtacgtggggattcaaa
gtatccgaggaacttcgtgtctgccgtaatctgcaggacataaacgattatattgcctat
tgggacgtgggacgaaaaaacttgccggttgcgacggacggtatcgtactaaaagtcaat
tcactgaaacagcagcgtttcctcgggcatacggccaagagtcctcgctgggccatctcg
tataaatttcaagctgagcgcgccgaaacacgtctgacgtccgtctcctatcaggtggga
cggacaggcgttgtcaccccagttgccaacttggaccccgttcaactggccggaacagtc
gtcaaacgcgcatcgctgcataatgccgatatcattgccggactcgatttgcatatcggc
gaccgcgtatatgtcgagaagggcggagaaattattccgaaaatcgttggggtaaatacg
gaagcacgtccgatgttgatgggcgataaggtcaccttcatacaccattgtccggaatgc
aggacggccttgatacgccccgaaggagaggcggcgcattattgcccgaacgagcgaacg
tgtccgcctcaggtgaaagggaagatcgagcatttcgtgacacgcaaagcgatgaatatc
aatatggggcctgagacggtcgaagatttgtatcatgccggttatgtgcgtaacgtggcc
gatctgtacaccctccgcaccgtcgatctgttacgtctcgaacgttgggcggagaagagc
gcgcaaaacctgatggacagccttgaagcctcgaaacaggtaccttttgagcgggtgctg
tacggtctggggattcggtatgtgggagaaaccgttgccaaacgattagcgtatgcgtac
ggcagcatggaacatctggaacaggcttcgctcgaatcgctcatacagacggacgagatc
ggcgaacggattgcacaaagcgtgatcgatttcttcgccgacgaacgcaatcgaaacatg
atcgaccgactgaaggaatacggtttgcagatggctttgcaggaagatgcaccggctaca
cgctcggagaaattgaatggactggcatttgtcatcagtggtacgtttacacgccattcg
cgcgatgaatacaaagccatgatcgagcaaaacggtggaaaaaatacgggttctatttcc
gggaaaaccgactacctccttgccggagccaacatggggccggccaaattggccaaagcc
gaaaaaatgggaattaaaattatcaatgaagaggaattcttaaacatattagcggaatga
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