Thiorhodovibrio frisius: Thiofri_00898
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Entry
Thiofri_00898 CDS
T09561
Symbol
ligA_1
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tfri
Thiorhodovibrio frisius
Pathway
tfri03030
DNA replication
tfri03410
Base excision repair
tfri03420
Nucleotide excision repair
tfri03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tfri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Thiofri_00898 (ligA_1)
03410 Base excision repair
Thiofri_00898 (ligA_1)
03420 Nucleotide excision repair
Thiofri_00898 (ligA_1)
03430 Mismatch repair
Thiofri_00898 (ligA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tfri03032
]
Thiofri_00898 (ligA_1)
03400 DNA repair and recombination proteins [BR:
tfri03400
]
Thiofri_00898 (ligA_1)
Enzymes [BR:
tfri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Thiofri_00898 (ligA_1)
DNA replication proteins [BR:
tfri03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Thiofri_00898 (ligA_1)
DNA repair and recombination proteins [BR:
tfri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Thiofri_00898 (ligA_1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Thiofri_00898 (ligA_1)
MMR (mismatch excision repair)
DNA ligase
Thiofri_00898 (ligA_1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Thiofri_00898 (ligA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
RNA_pol_A_CTD
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
WPL20795
LinkDB
All DBs
Position
complement(848032..850080)
Genome browser
AA seq
682 aa
AA seq
DB search
MKDKIPAGSSAARASELRTLLEHHNYRYYVLDDPEIPDAEFDALLRELQQIEEQHPDLRT
PDSPTQRVGASPAERFAPAEHLAPMLSLGNARTADDLRDFDQRIRRELGIEQVHYVAEPK
LDGLAISLVYEDGLLTRAATRGDGRTGEDVTAQVRTIGAVPLRLRGTGWPRLLEVRGEVY
LPLAGFEALKQRMLDNGQTPVKNPRNAAAGSLRQLDPTITASRPLAIFCYGFGAVEGGNL
GSTQSDALAHLRAFGLRISPESTCVTGAEGCIQYQEAMAARRDGLDYEIDGVVFKVDDLT
AQRRLGFRARDPIWAIAFKYPAREEQTRVRAVEFQVGRTGAVTPVARLEPVDVAGVTVSN
ATLHNIDEVHRKDVRVGDTVIVRRAGDVIPEVVGVVASLRPPDTEPVALPAHCPVCGSDV
IRAEGEAVARCSGGLICAAQRKEALKHFASRRALDIDGLGDKLIEQLIEQDLVKTPADLF
ALNTEQLANLPRMGEKSATNLLTALDQSRETTLARFIHALGIREVGETMASVLASHFGTL
ESLMQADEEALVAIDGVGQTVAQHIRSFFAQDHNREVIAQLIDPSGARLHWPDPPRPHDN
QEQPLTGRTFVLTGTLTRPRDYIKAELIARGAKVTSSVSSNTDYVVAGENPGSKATKAAQ
LGIPILDETQLRLLLADPGPNS
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacaaaatcccggcgggctcgagcgcagcacgcgcaagcgaactgcgaacccta
ctcgagcatcacaattatcgctattacgttcttgatgacccggaaatcccggacgccgaa
ttcgacgccctgctgcgcgagctccagcaaatcgaagaacagcaccccgacttgcgcacg
ccagactcgcccactcagcgggttggtgcatcgccggccgagcgtttcgcgccagcggag
catctcgcgcccatgctctcgctcggcaacgcccggactgccgatgacctgcgcgacttc
gatcagcgcatccgtcgtgaactcggcatcgagcaagtgcactatgtcgccgagccaaag
cttgatggcctcgccatcagtctggtttatgaagacggcctgctgacgcgagctgccacc
cgcggcgatgggcgcactggcgaggatgtcacggcccaggtgcgcaccattggtgccgtg
ccgctacgactgcgcggcacgggttggccgcggctgcttgaggtacgcggtgaggtatat
ctgccgcttgccggcttcgaagcgctcaagcagcgcatgctcgataacggtcagacaccc
gttaagaacccccgcaatgccgccgccggcagcctgcgccagctcgacccgaccatcacc
gccagccgaccgctggccatattctgttacggcttcggcgccgtcgaaggtggcaatctt
ggctcgacgcagagcgacgcactcgcgcatctgcgcgccttcgggctgcgtatttcgcct
gagtcgacctgcgtgaccggagccgagggctgcatccaataccaggaggccatggccgcg
cggcgcgacgggctcgattacgaaatcgatggtgtggtgtttaaggttgatgacctgacc
gcccagcgacggctcggttttcgcgcacgcgatcccatctgggccattgccttcaagtac
cctgcgcgcgaagagcaaacccgggtgcgagcggtggaattccaggtcggacgcacaggc
gctgtcacaccggtagcccggctggagccggtcgatgttgccggggtcaccgtctccaac
gccaccttgcacaacatcgatgaagtccaccgcaaggatgtgcgcgttggcgataccgtc
atcgtgcgccgcgctggcgacgtcatccccgaggtcgtcggcgtggtcgcctctctgcga
cctccagacaccgagccggtcgccctgcccgcgcactgtccagtgtgcggctcagatgtg
atccgcgccgagggcgaagcagtcgcgcgttgcagtggcggcctcatctgcgccgctcaa
cgcaaagaggcgctcaagcattttgcctcgcgccgcgcgctcgacatcgacggcctcggc
gacaaactcattgaacaactcattgaacaggacttggtcaaaaccccggctgatctgttt
gcgcttaacacagagcaactcgccaatctgccacgtatgggcgagaaatccgcaaccaat
ctgctcaccgccctggaccaaagccgcgagacaaccctggcccgattcatccacgcgctt
ggcattcgcgaagtaggcgaaaccatggccagtgtgctggcctcgcactttggcaccctg
gagtcgctgatgcaggccgatgaagaggccctggtcgccattgatggcgtgggccagacg
gtcgcccagcacattcgcagcttctttgcccaagaccacaatcgcgaggtaatcgcgcaa
ctcatcgaccccagtggggcccggctgcactggcccgacccaccgcgtccccacgacaac
caggagcagcccctgactggcagaacctttgtcctgaccggcaccctcacgcgcccgaga
gactacatcaaagcagagctgatcgccaggggcgccaaagtaacaagctctgtctcatcc
aacaccgactatgtggtcgccggcgagaaccccggtagcaaggcgaccaaggccgcccaa
ctcggcatccccattctcgacgaaacccaactgcggttgctgcttgccgaccctggtccg
aatagctag
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