KEGG   Takifugu flavidus (sansaifugu): 130533569
Entry
130533569         CDS       T09160                                 
Symbol
smndc1
Name
(RefSeq) survival of motor neuron-related-splicing factor 30
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
tfs  Takifugu flavidus (sansaifugu)
Pathway
tfs03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tfs00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    130533569 (smndc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tfs03041]
    130533569 (smndc1)
Spliceosome [BR:tfs03041]
 Complex A
  U2 snRNP components
   U2 related factors
    130533569 (smndc1)
 Complex B
    130533569 (smndc1)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    130533569 (smndc1)
SSDB
Motif
Pfam: SMN_Tudor TUDOR SGF29_Tudor PUA_4 Atrophin-1 Chorismate_bind_2
Other DBs
NCBI-GeneID: 130533569
NCBI-ProteinID: XP_056903077
LinkDB
Position
11:10001064..10003392
AA seq 238 aa
MSEELMKQLNSYKAQLQQVEVALSTDTENEDLQKLQKDLQEVIDLTKDLLASQPSDSTST
TNGSETVPLRHNWKAGDKCLAVWTNDGQLYEAEIEEVDRENKTAAVTFSGYGNAELIPLQ
NLKAVEEGKQCKIDGSTKPKSKKEQIAEQREYKKKKAQKKVQRMKELEQEREDQKSKWQQ
FNNKAYSKTKKGQVKKSIFASPESVNGKVGVGTCGIADKPMTQYNDTSKYNVRHLMPQ
NT seq 717 nt   +upstreamnt  +downstreamnt
atgtcagaggagttgatgaaacagttaaacagctataaagcccagctgcaacaggttgaa
gttgccttatcgaccgacacagaaaacgaagacctccaaaagcttcagaaagacttgcag
gaggtcatagatttgaccaaagacctgctggcctcgcagccttctgatagcacttcaacc
accaatggctctgaaacggtgcctttaaggcacaactggaaagctggggacaagtgtctg
gctgtctggactaatgatggacagttgtatgaggctgagattgaggaggttgaccgagag
aacaagactgcggccgtaaccttctccggatatgggaatgctgaattgattcctctgcag
aatcttaaagcggtggaagaagggaaacagtgtaagatcgacgggagcaccaagccgaaa
tcaaagaaagagcagatagcagagcagcgggagtacaagaagaaaaaagcccagaagaag
gtacaaagaatgaaggaactggagcaagaacgggaggaccagaagtcaaagtggcaacag
tttaacaacaaggcctactcaaagaccaagaagggccaggtaaagaagagcatatttgca
tctccagaaagtgttaatggtaaggttggtgtgggaacgtgtggtatcgcagacaaacca
atgacccagtataacgacacatccaaatacaacgtgaggcatttaatgcctcagtga

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