Tunturiibacter gelidiferens: RBB81_03385
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Entry
RBB81_03385 CDS
T10211
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tgi Tunturiibacter gelidiferens
Pathway
tgi03030
DNA replication
tgi03410
Base excision repair
tgi03420
Nucleotide excision repair
tgi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tgi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RBB81_03385 (ligA)
03410 Base excision repair
RBB81_03385 (ligA)
03420 Nucleotide excision repair
RBB81_03385 (ligA)
03430 Mismatch repair
RBB81_03385 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tgi03032
]
RBB81_03385 (ligA)
03400 DNA repair and recombination proteins [BR:
tgi03400
]
RBB81_03385 (ligA)
Enzymes [BR:
tgi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RBB81_03385 (ligA)
DNA replication proteins [BR:
tgi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RBB81_03385 (ligA)
DNA repair and recombination proteins [BR:
tgi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RBB81_03385 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RBB81_03385 (ligA)
MMR (mismatch excision repair)
DNA ligase
RBB81_03385 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RBB81_03385 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
5_3_exonuc
HHH
BRCT_2
MutL
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
XCB22977
UniProt:
A0AAU7Z290
LinkDB
All DBs
Position
complement(720550..722700)
Genome browser
AA seq
716 aa
AA seq
DB search
MASELTPDQAIQELRDQLRHHEYLYYVEDAPELTDAQYDALMNRLKRLEEKHPELVTADS
PSQRVGGKPKEGFTKMPHSRPMLSLDNAYNEEELRAWDQRVRDALPSTEAVRYVCELKLD
GLSLALQYGAGSGKGEAHGAKDGSAHLVRGLTRGDGSIGEDVTSNVRTIRSVPLSISAAK
LKAAGLPQSFEVRGEVVLPQASFLKLNEEREAAGQAPAANPRNAAAGTIRTLEPNIVAQR
RLDFYAYFLLRDGEFLLPQQSTALDALKTSGFRVNKYVRALKSIDEVVKFIADAEPLRDS
LGYEIDGVVIKVDATAQQRRLGFTGKAPRWAIAYKFAARAGITKLEDVLFQVGRTGKVTP
VAALAPVLIGGTTVSRATLHNADEIARLGVRIGDFVQVERGGDVIPKIVEVVEDKAHPRG
TKEIVSPKNCPVCASELQRIEGEVDWRCVNNSCPARVREELLHWSARGVMNIEGLGDAMV
AQLLGQSAELGGESQVVTEEGAPVVVRRPLIHTIGDLYRLKREDLLGLERVGEKTADALL
EEIKRSKKAGLARVLLGLGVRFVGERTAQLLAEHFGSMDELMTAATQDSEKASEALEAVN
EVGPKVAQAIVEFFAVEKNKELVKDLAALGLEMTAEKRVTTSTLEGLTFVLTGTLPNLTR
ESAKEKIESAGGRVSGSVSKKTSYVVAGEEAGSKLDKANSLGVKVLDEAGLLELLG
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atggcttcagagcttacacccgatcaggcgatacaggagctgcgcgatcagcttcgccac
catgaatatttgtattacgttgaagacgcgccggagctgacggatgcgcagtatgacgcg
ctgatgaaccggctgaagcggctcgaggagaagcatccggagctggtgacggcggactcg
ccttcgcagcgtgtgggtgggaaaccgaaagagggattcacgaagatgccgcactcgcgg
ccgatgctgtcgctggacaatgcgtacaacgaagaggagctgcgggcgtgggatcagcgg
gtgcgtgatgctctgccgagtacggaggccgtgcggtatgtatgcgagctgaagctggat
ggtttgtcgctggcgcttcagtatggggctggatctggcaaaggcgaggcgcatggcgcg
aaagatggctcggcgcatctggtgcgggggctgacgcgtggggatgggtcgattggcgag
gatgtgacgagcaatgtgaggacgattcggtctgtgccgctgagtatctcggctgcgaag
ttgaaagcggcgggtttgccgcagagctttgaggttcgcggtgaggtggtgttgccgcag
gcgtcatttttgaagctgaatgaagagagggaggcggcgggacaggctccggcagcgaat
ccgcggaatgcagcggcggggacgattcgtacgctggagccgaatattgtggcgcagagg
cggctggatttttatgcctactttttgttgcgggatggggagtttttgttgccgcagcag
tcgaccgcgctcgatgccttgaagacttcgggttttcgcgtgaacaagtatgtcagggct
ttgaagagcatcgacgaggtggtgaagtttattgcggatgcggagccgctgcgtgattcg
ctggggtatgagattgatggtgttgtgatcaaggtggatgctacggcgcagcagcggagg
ctggggtttaccgggaaggctccgcggtgggcgattgcatacaagtttgcggcgcgggct
gggattacgaagttggaggatgtgttgtttcaggtggggcgtacagggaaggtgactccg
gtggcggcgcttgcgcccgtgttgattggggggacgacggtgtcgcgggctacgttgcat
aatgcggatgagattgcgcggcttggcgttcgcattggggattttgtgcaggtggagcgt
ggtggcgacgtgattccgaagattgtggaggtggtggaggataaggcgcatccgcgaggg
acgaaggagattgtgtctccgaagaactgcccggtttgtgcgagcgaactgcaacggatt
gagggcgaggtggattggcggtgtgtgaacaactcttgtccggcacgagtgcgtgaagag
ttgctgcactggtcggcgcgtggagtgatgaacattgaagggttgggcgacgcgatggtg
gcgcagctgcttggccagagtgcggagctgggcggcgaatcgcaagtagtgacggaggag
ggggcgccggtcgtggtgcggaggccgctgattcatacgattggcgacttgtaccggctg
aagcgcgaggatttgcttgggctggagcgcgtgggcgagaagactgcggatgcgctgctg
gaagagattaagcgttcgaagaaagcggggctggcgcgcgtgctgttggggctgggagtc
cggtttgtgggtgagcggacggcgcaactgctggcggagcacttcggttcgatggatgag
ctgatgacggcggcgacccaggattcggagaaggcgagcgaggcgttagaggcggtgaat
gaggtggggccgaaggtggcacaggcgatcgtggagttcttcgcggtggagaagaacaag
gagttggtgaaggatcttgcggcgctagggctggagatgacggcggagaagcgggtgacg
acttcgacgctggaggggttgacgtttgtgctgacggggacgctgccgaatcttacgcgg
gagtcggcgaaggagaagatcgagtctgcgggagggcgggtttcggggagtgtgagcaag
aagacgagctacgtggttgcgggggaggaggcgggctcgaagctggataaggcgaattcg
ctgggggtgaaggtgctggatgaggcggggttgctggagttgctggggtag
DBGET
integrated database retrieval system
