Thalassovita gelatinovora: HFZ77_01730
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Entry
HFZ77_01730 CDS
T06533
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tgl
Thalassovita gelatinovora
Pathway
tgl03030
DNA replication
tgl03410
Base excision repair
tgl03420
Nucleotide excision repair
tgl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tgl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HFZ77_01730 (ligA)
03410 Base excision repair
HFZ77_01730 (ligA)
03420 Nucleotide excision repair
HFZ77_01730 (ligA)
03430 Mismatch repair
HFZ77_01730 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tgl03032
]
HFZ77_01730 (ligA)
03400 DNA repair and recombination proteins [BR:
tgl03400
]
HFZ77_01730 (ligA)
Enzymes [BR:
tgl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HFZ77_01730 (ligA)
DNA replication proteins [BR:
tgl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HFZ77_01730 (ligA)
DNA repair and recombination proteins [BR:
tgl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HFZ77_01730 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HFZ77_01730 (ligA)
MMR (mismatch excision repair)
DNA ligase
HFZ77_01730 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HFZ77_01730 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
DNA_ligase_ZBD
HHH_2
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QIZ82437
LinkDB
All DBs
Position
362440..364995
Genome browser
AA seq
851 aa
AA seq
DB search
MSEEEARAELERLSRLLAAANIDYHRKDAPELSDADYDALKRRNAEIEDRFPHLKRGDSP
TDQVGAAPADGFGKVTHAVRMLSLGNAFDDGDVQEFDDFIRKYLGRGIESVAYTAEPKID
GLSLSLRYEGGTLVQAATRGNGEVGENVTENARTIADIPHHLTNAPDVLEVRGEVYMSHA
DFEALNARQMEKGDKLFANPRNAAAGSLRQLNPEITRERPLKFFAYAWGELSEPLADTQH
GAMARLAALGFHINDLTRLCDGVDEMIAHYRLIEQKRATLGYDIDGVVYKVDDLGLQARL
GFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLAPVTVGGVVVSNATLHN
EDYIAGRDAKGEQIRGGKDIRVGDWVQVYRAGDVIPKLADVDISKRPEDAEPYVFPTRCP
ECGSDAVREEGDAVRRCTGGIICPAQAVEKLKHFVSRAAFDIEGLGAKQVEYFYTDDLLP
VKEPADIFTIEARDNANLAKLANREGWGEKSASNLFASIRGRKTVELPRFIFALGIRHIG
SEVSRDLALFHRRWNAIVETNETVKNKRIELAVSTWLPKFAGHNTNWIELFETACELREF
ELNFWNKLFKYKGVAGIGLLGNLRKVFGRNLTQVDAVKAKQIFELTFKNTKQYPDKYDQA
INEFGTIEAFQCALVVKTDAIRFHWARFAGLLGFSQPEHLWETLGGWSTASKKLEGHIKK
DTALCSEMLPLVGHGEAVVNSLIHFFANDDNVAALNRLLAHVEPQEFEQPTMKESPVAGK
TVVFTGTLEKMTRAEAKARAEALGAKVSGSVSKKTDLLVAGPGAGSKAKKAADLGVETID
EDTWLEMIEGL
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
ctgagcgaagaagaagccagagccgagctggaaaggttgtcgcgcctgctggccgcggca
aatatcgattatcatcgcaaagacgcgccggaattgtccgatgccgattacgatgcactg
aaacggcgcaacgccgagatcgaggaccgttttccgcatcttaagcgcggcgacagccca
acagatcaggttggtgccgctccggcagacggtttcggcaaggtgacacatgcggtgcgt
atgttgtcgctgggcaatgccttcgacgatggtgacgtgcaggaatttgacgatttcatc
cgcaaatatcttggtcggggcatcgaatcggtggcctatactgcggaacccaaaatcgat
ggactcagcctgtcgctgcgctacgaaggcggaacgctggtgcaggcggcaacgcgcggc
aacggtgaggtgggggaaaacgtcactgaaaacgcccgcacaattgcggatattccgcac
catttaaccaatgcacccgacgtgctggaagtgcgcggtgaagtatatatgagtcacgcc
gattttgaggcgttgaacgcgcggcagatggaaaaaggcgacaagctatttgccaacccg
cgcaacgccgccgccggatcgctgcgccagctcaatccggaaattacccgcgaaagaccg
ctgaagttttttgcctatgcctggggggagttgtcagagccccttgccgatactcagcac
ggggccatggcgcggctggctgcgcttggttttcatatcaatgacttgacccgcctttgc
gatggtgtcgatgaaatgatcgctcattaccggttgatcgagcagaaacgcgcgacactc
ggctatgacatcgacggggtggtgtacaaggttgacgatctgggcctgcaggcacggctg
ggattccgatctacgacgccacgttgggcgattgcgcataaatttcctgccgaactggct
tggacccggctggaagcgatcgacattcaggtcgggcgcacaggagcgttgagcccggtg
gcgcgattggcaccggtaacggtgggtggtgtggtggtcagcaatgccaccttgcataac
gaagattacatcgccgggcgcgatgccaagggcgaacagatccgcggcggcaaagatatc
cgggtcggcgactgggtgcaggtctaccgcgctggcgacgtgattccaaagctggcggat
gtggatatttcaaaacggcccgaggatgcggaaccctatgtgttcccaacccgctgccct
gaatgcggatcggacgcggtacgcgaagaaggagacgcggtgcgccgctgcactggcggt
atcatttgcccggcgcaggctgttgaaaaactgaaacatttcgtatcccgcgcggccttc
gatatcgaagggctaggggctaaacaggtggaatatttctacaccgacgacttgctgcca
gtgaaagaaccggcagatatcttcaccatagaagctcgggacaacgcaaacttagccaaa
cttgccaatcgagaaggttggggagaaaagagtgcgagcaatctgtttgcgtccattcgt
ggaagaaagaccgtcgaacttccccgctttatcttcgctcttggtatccgccatataggt
tcagaagtttctcgtgatctagctctgtttcatcggcgttggaacgccatcgtagaaaca
aatgaaacggttaaaaataaacgtatcgaactcgcggtctcaacttggctcccaaaattt
gcaggacacaacacaaactggatagagttatttgagacagcatgcgaattacgcgagttt
gaactgaacttttggaacaagttgttcaaatacaagggcgtagcaggaattggtctttta
ggtaaccttcgtaaagtgttcggccgaaacctcacccaggttgatgccgtcaaggctaaa
cagatttttgaactcacgtttaaaaacactaaacaataccctgacaagtatgatcaagcg
atcaatgagttcggaaccattgaagcgtttcaatgtgcgctggttgttaaaacagatgca
atacggtttcactgggcacgatttgctggtctccttggcttctctcaaccagagcacctt
tgggaaactctagggggctggagtacagcatcaaagaagcttgagggtcacattaaaaaa
gacactgctctctgttcagagatgttaccccttgtcgggcatggtgaagcagtcgtgaat
tcactaattcacttcttcgctaatgacgacaatgtagcggcactcaatcgtttattagct
catgttgagcctcaagagtttgaacaacccacgatgaaagaaagcccggtggctggtaaa
acggttgtcttcaccggcacgctggaaaaaatgacccgggccgaagccaaggcgcgggcc
gaagcgttgggggccaaagtgtcgggatcggtcagcaagaaaaccgatcttctggtggcc
ggacccggggccggatcgaaggcgaaaaaggcggcggatctgggtgtggaaaccatcgac
gaagacacctggctggagatgattgaggggctatga
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