KEGG   Taeniopygia guttata (zebra finch): 100219868
Entry
100219868         CDS       T01082                                 
Symbol
SMNDC1
Name
(RefSeq) survival of motor neuron-related-splicing factor 30
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
tgu  Taeniopygia guttata (zebra finch)
Pathway
tgu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tgu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100219868 (SMNDC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tgu03041]
    100219868 (SMNDC1)
Spliceosome [BR:tgu03041]
 Complex A
  U2 snRNP components
   U2 related factors
    100219868 (SMNDC1)
 Complex B
    100219868 (SMNDC1)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    100219868 (SMNDC1)
SSDB
Motif
Pfam: SMN_Tudor TUDOR DUF2067
Other DBs
NCBI-GeneID: 100219868
NCBI-ProteinID: XP_002197711
Ensembl: ENSTGUG00000010599
UniProt: H0ZK11
LinkDB
Position
6:complement(24996716..25006368)
AA seq 238 aa
MSEDLAKQLASYKAQLQQVEAALSGNADNEDLLKLKKDLQEVIELTKDLLSTQPSETLAS
SDSSASALPSHSWKVGDRCMAIWSEDGQCYEAEIEEIDEENGTAAVTFAGYGNAEVTPLF
NLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQ
FNNRAYSKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ
NT seq 717 nt   +upstreamnt  +downstreamnt
atgtcagaagaccttgctaagcagttggccagctacaaagctcagctccagcaagtcgag
gctgccttatctggcaatgcagacaatgaggatttactgaaactgaagaaagacttacag
gaagtcatagagttaaccaaagatctcctttcaacacaaccttcggaaactcttgcgagt
tctgacagttccgcgtccgccctgcccagtcactcatggaaggttggggataggtgtatg
gccatatggagtgaggatggacagtgttacgaagctgagattgaagaaatagatgaggag
aatggaacagctgcagttacatttgctggatatggcaacgctgaagtcacacctctgttc
aacctcaagcctgtggaagagggaaggaaagcaaaagaggacagtggcaacaaacccatg
tccaaaaaagagatgatagcccagcaacgagagtataaaaagaagaaagctttgaaaaaa
gctcagagaattaaagaacttgaacaggaacgagaggaccagaaagtcaagtggcaacag
tttaacaacagagcctattctaaaaataaaaaaggccaggtgaaaaggagtatttttgct
tcccctgagagcgtaactggcaaggttggcgttggaacatgtggaattgcagacaaacct
atgacacagtatcaagatacctctaaatataatgtcaggcatctgatgcctcagtaa

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