Taeniopygia guttata (zebra finch): 100224649
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Entry
100224649 CDS
T01082
Symbol
BRCA1
Name
(RefSeq) breast cancer type 1 susceptibility protein isoform X2
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03440
Homologous recombination
tgu03460
Fanconi anemia pathway
tgu04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
100224649 (BRCA1)
09124 Replication and repair
03440 Homologous recombination
100224649 (BRCA1)
03460 Fanconi anemia pathway
100224649 (BRCA1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tgu01009
]
100224649 (BRCA1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tgu04121
]
100224649 (BRCA1)
03036 Chromosome and associated proteins [BR:
tgu03036
]
100224649 (BRCA1)
03400 DNA repair and recombination proteins [BR:
tgu03400
]
100224649 (BRCA1)
Enzymes [BR:
tgu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
100224649 (BRCA1)
Protein phosphatases and associated proteins [BR:
tgu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100224649 (BRCA1)
Ubiquitin system [BR:
tgu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
100224649 (BRCA1)
Multi subunit type E3
BRCC complex
100224649 (BRCA1)
Chromosome and associated proteins [BR:
tgu03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
100224649 (BRCA1)
DNA repair and recombination proteins [BR:
tgu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
100224649 (BRCA1)
BRCA1-A complex
100224649 (BRCA1)
BRCA1-B complex
100224649 (BRCA1)
BRCA1-C complex
100224649 (BRCA1)
BRCA complex
100224649 (BRCA1)
FA (Fanconi anemia) pathway
Downstream FA components
100224649 (BRCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT_assoc
BRCT
zf-C3HC4
zf-C3HC4_4
BRCT_2
zf-C3HC4_2
zf-RING_UBOX
RING_XB3-XBAT31
zf-RING_2
zf-Nse
zf-C3HC4_3
BRCT_3
zf-RING_6
zf-RING_5
zf-RING_10
Pepco
RTT107_BRCT_5
OKR_DC_1
Zf_2nd_IFT121
zf-RING_4
zf-ANAPC11
Motif
Other DBs
NCBI-GeneID:
100224649
NCBI-ProteinID:
XP_030112190
LinkDB
All DBs
Position
27:2041528..2059809
Genome browser
AA seq
1804 aa
AA seq
DB search
MDFSVITIGQVQNVLSAMQKNLECPICLDVVQEPVSTKCDHTFCRFCMFKLINKKKKGVV
ECPLCKTEVTKRSLKENSRFKQLIEGLLEAIHAFELDTGVKFLKNHHFPKTSTEATAESL
CKESSVIQSKGFRNRRKSAKGNEQENFTLQEASVNIHLTDAKMCRPRNKPQKSDSQKGIY
IEFGSESSEEFFKQASKTGFEDKGTVQSSSQVRLEELESAEKANENSCNAQPDKLCAKEI
TLPDIIGESDFSKECLSKKSTRSITECAKADQVNVTECQSSPLKVLAADLLPEQCDRAGD
ASPTVNEDTPFFKNIEEMEEQQAQYSSENQEFDLEDSSESRLDKSREMDTDVQSVEAVEG
YEPENDSSYDKEHPLEELPQPETLHSASLNKVSKKRLKQSIQKVNEWFSKSNEALSSSSS
LDESAASADVSGEGDLCSSDKESCISAKTDPVADSMKIAAVEGKKRWSKQTAENIKDKIF
GKTYKRGRKSNPPSTLRDILPTKQKADMAADKCLNDFSKDRLKRKRKTACVLQPEDFIKK
KDTEEADGGPQSVNGGLGEAEKKRCDESVAVNESHLSQNRAKNTLTEPEEGGESTWKKAT
EKVTTKHCDGEPEMYNCDQKSSKKRSSAAKRCRHSSRTMCALQLVVDRGSVFPDAAEPQI
DSFPSSGEPRQADSEQNPVRRSRRLQLLSEEVTKGTRKGVKGARKTNSGSGRSISRDQRN
VATQSAECQDLCEPQDELSYRPVTNMEGGDLEANEMQVTLKNLYHTEETGKSLFRPSCLP
SNCGSTVPDTDSQDSKILGSPLLLQLPSLSANQTASHQTEEGTESPTAFPPECGHDSQNV
PGDFKTEKLPMAKNVLELTKEAEESDLDTQYLRNIFRHSKRSSFSLFQAPRQARAVEEPP
SETLNLSCAAQVENKASKQLQTESLQEERTAAQNLSRLSEKERLKPCESAHVDPVPCFAV
STGEHRDGISQAAEEGALTPARTGTAQTEHKNGLLQEEQVNEKPVSDEIGIESELRQNPT
ESDGSQSDQSNTEKQDSRQNDLNTGQENSFSSECNQAGKTEVVDCTEPILHFQSTSTICS
ATCQQSPAEFSCEVTRTKSSKRERKLVKGNEEEAAQTVSTAVEALEEPVRENHDLTRLSE
TPNALLCSDTDIEENTSLCETDRKEQSAVFVKSDNALGKELHKRNASSKPRSRGVRKSRR
RVQKLPSSDEESCEDEDLPCFRTLIFSKSASTPLQTDKQMASVAESPVAECPASPNVLPH
SVSNDGNIVQKVPEAALSNVCVSPSQESECSVNLFSSQSNMSEESLNGAQELNKHLPQAH
VSKQMSSVNDSKETSQNSSGGLKETKDECQGVPDMGANLGEASGYDSEISLVEDSCGPFS
QGEILTTQQKNAMQNNLKKLQQEMAALEAVLKQNGSENCEVLPVHRELPHSSTEGAFEMD
QMRKENNRSPEWLLSSSKSSSAKRTDLEKGPECDSVLKNKTPSEKTKPVQEAVQEHRQCQ
LGAENAEEQKSGTRQNSASVSSDLFGNESRDNSSSSVRLFTPQTAEATGGPVLAQNTDKS
CGLGHKLKRSECFPATLLHNATGKENTTNPVVTKRKKMSIVVSGLHHSEHLVVQKFVKKT
QSTLSNHITEGTTHVIMKTDEELVCERTLKYFLGIAGGKWVVSYQWIIQSFKEGRILDEE
KFEVRGDVINGRNHQGPKRAREALTGKIFKDFEICCCGPFTDMTTEHLEWMVELCGASVV
KRPDLFTPTANSAAVVVVQPDAWKENVDYRAMQQQSSVAVVTREWVLDSVACYQCQELSA
YLVS
NT seq
5415 nt
NT seq
+upstream
nt +downstream
nt
atggacttctcagtaattactattggacaagtacaaaatgtgctttcagctatgcagaag
aatttggagtgcccgatatgcctggatgtggtacaagagcctgtttcaacaaaatgtgat
cacacgttctgcaggttctgcatgttcaaacttataaacaaaaagaaaaaaggtgtggta
gagtgtcctctgtgcaagactgaagttaccaagagaagtctgaaagaaaattccagattt
aagcaactaattgaaggactgttggaagctatccatgcttttgagcttgacactggagtg
aagtttttaaagaatcatcactttcctaaaacatccacggaagccactgctgagtccctg
tgtaaagaaagttctgtcatccaaagcaagggcttcagaaacaggagaaaaagtgctaaa
ggaaatgaacaagaaaacttcaccttgcaggaagctagtgtgaatattcaccttacagat
gccaaaatgtgtcgcccaagaaacaaaccccagaaatctgactctcaaaagggtatttat
atagagtttggctctgaatcatctgaagagttttttaaacaggcaagcaaaactgggttt
gaagacaaaggaacagttcagagttcttctcaagtaaggctggaagaacttgagagtgct
gagaaagcgaatgaaaattcttgtaatgcacagcctgacaagttgtgtgccaaagaaata
acactaccagacatcataggtgaaagtgatttctcaaaggaatgtttgagcaagaaaagc
actcggagcatcactgaatgtgccaaagctgaccaagtgaatgtgactgaatgccagagt
tctcctttgaaggttcttgctgcagacctgctcccagagcagtgtgacagagcaggtgat
gccagtcccacagtgaatgaggacacaccattctttaagaacatagaagaaatggaggaa
cagcaagcccagtacagcagtgaaaaccaagagtttgatttagaagatagctcagagagc
aggctggataaaagcagggaaatggatactgatgtacaaagtgtggaagctgtagaggga
tatgaacctgagaatgactcttcctatgacaaagaacatcctctggaggagctacctcag
ccagagacacttcactctgcctccctgaataaagtctccaagaagagactgaagcagagc
attcagaaagtcaacgaatggttttcaaaaagcaatgaggctttgtcttccagttcttca
ctggatgaatctgctgcatcagctgatgtttcaggtgaaggagatctgtgttcatcagat
aaagagtcctgtatttcagcaaagactgaccctgtggcagattccatgaaaattgcagca
gtggaaggaaaaaagaggtggtcaaaacaaacagcagaaaacatcaaagacaaaatattt
ggaaaaacgtacaagagagggaggaaatcaaatcccccttctaccttgagagacattttg
cctactaagcaaaaggcagatatggctgctgataagtgcctgaatgatttcagcaaagac
agactcaaaagaaagaggaagactgcctgtgtcctgcaacctgaggatttcatcaagaaa
aaggacacagaagaggcagatgggggccctcaaagtgttaatggaggccttggagaagct
gaaaagaaaagatgtgatgaaagtgttgctgttaatgagagtcacctctctcagaataga
gcaaaaaatacattaacagaacctgaggaaggaggagagtccacatggaagaaagctact
gagaaggtcactacgaagcactgtgatggggaaccagaaatgtataactgtgatcagaaa
agcagcaaaaaaagaagttctgcagcaaaaagatgcaggcattctagtagaactatgtgt
gctctacagttagtagtggacagaggctctgttttccctgatgcagctgagccacagatt
gacagcttcccaagcagtggagagcccaggcaagctgattctgagcaaaacccagtcaga
cgcagcagaaggcttcagttactctctgaagaagtaacaaaaggaacaaggaaaggagta
aagggagcaagaaaaactaacagtggtagtgggaggtctatctctcgagaccaaaggaat
gtggcaactcagtctgctgaatgccaagacctgtgtgagcctcaagatgagttgagttac
aggccagtcactaatatggagggaggtgatctggaagcaaatgaaatgcaggttacccta
aagaatttatatcacactgaagaaactggaaaaagtctgttcagaccttcatgcctgcct
tcaaactgtggttccactgtgcctgatacagattctcaagacagtaaaattctaggtagc
cccctcctcctacaacttccttcactgtctgctaatcaaactgcttctcaccagactgaa
gaggggactgaatcacctactgcatttcccccagaatgtgggcatgattcacaaaatgtt
ccaggggacttcaaaactgaaaagttgccaatggctaaaaatgttttggaattgactaag
gaagctgaagagagtgatttggacacccagtacctgcggaatatatttcggcattcaaag
cgctcatccttcagcctttttcaggctccaaggcaggcacgtgcagtggaagagcctcct
tctgaaaccctaaatctatcatgtgctgctcaggtagaaaataaggctagcaaacaatta
caaacagaaagcttgcaagaggagagaacagctgctcaaaacttgagcaggctttctgag
aaagagaggcttaagccctgtgagtctgcacatgtcgatcctgtgccttgctttgctgtc
agcacaggagagcacagggatggcatttcacaggctgcagaggaaggggctctgacacca
gcaagaacagggactgctcagactgagcacaaaaatggattgctacaagaagagcaggtc
aatgaaaagccagtgtcagatgagatagggatagaaagtgagttgagacagaatcccact
gaaagtgatggaagccaaagtgatcagagtaacacagagaagcaggattccagacaaaat
gatttaaacacaggccaggaaaacagcttcagttcagaatgcaatcaggcaggaaaaact
gaagttgttgattgcacagaaccaattctacattttcaatccacatcaacgatttgttct
gcaacttgtcagcaaagccctgctgaattcagctgtgaagtcactaggacaaaaagtagc
aaaagagaaagaaaacttgtaaaggggaatgaagaagaagcagcccaaactgttagcaca
gctgtagaggctctggaagaacctgtcagagagaatcatgatcttacacgtttgtctgaa
acccctaatgccttactgtgctctgatactgacattgaggagaacaccagcttatgtgaa
actgataggaaagagcaatctgcagtgtttgtaaaaagtgacaatgctctgggaaaagaa
ctgcacaagagaaatgcaagctctaagccaagatctcgaggtgttcgaaagtctcggaga
cgagtgcagaaactgccatcttcagatgaagagtcctgtgaggatgaggacttgccatgc
tttaggacattaatcttcagcaaatcagcaagcacacctttgcagactgataaacaaatg
gcatctgtggccgagtctccagtggcagagtgtccagcgagcccaaatgtgctgcctcac
agtgtgagtaatgatggcaatatcgtgcagaaggtgcctgaagctgccctaagtaatgtg
tgtgtttcaccaagccaggagtcagaatgctctgtcaacttattttcttcccagtccaac
atgtctgaagaatcgctcaatggagcacaagaactgaacaaacatttaccacaagctcat
gtgtccaaacaaatgagcagtgtaaatgacagtaaagaaacttctcagaattctagtgga
gggctgaaggaaaccaaagatgaatgccaaggagtcccagacatgggagcaaatctaggt
gaagcatctggatatgacagtgaaataagtcttgtagaagattcctgtggaccattctct
cagggtgaaatcctcactacacagcaaaagaatgctatgcagaataacctgaaaaaactt
cagcaagaaatggctgcacttgaagcagtgctaaagcagaatggaagtgagaattgtgaa
gttttacctgtccacagggaactgccacattccagtactgaaggagcatttgaaatggat
caaatgagaaaagaaaataacaggtctccagaatggttgctttcatcttctaaatcctct
tcagcgaagagaacagatctggagaaaggccctgagtgcgacagtgttctaaagaacaaa
actccctctgaaaagacaaaacctgtgcaggaggcagtgcaagaacacaggcagtgtcag
cttggagcagaaaatgcagaggagcagaaatctgggaccaggcaaaacagtgcatctgtc
tcatcagatctttttggaaatgagagtcgagataactcttcctcctctgtaaggcttttt
acccctcaaactgcagaagccacaggtgggcctgttctggctcagaacactgataaaagc
tgtggcctaggccacaaattgaagagaagtgaatgttttcctgcaactcttctgcacaat
gcaactgggaaagaaaatactacaaatccagtggtgaccaagaggaaaaaaatgtctatt
gtggtatcaggtctacatcacagtgagcacttggtggtccagaagtttgtgaaaaaaact
cagagcactttatctaatcacattactgaaggaacaacccatgtcataatgaaaacagat
gaggagctggtgtgtgaacggacactgaagtatttcctgggcattgcaggaggcaaatgg
gttgttagttatcagtggataattcagtcttttaaagaaggaagaatattggatgaggag
aaatttgaagtcagaggagatgtaatcaatgggagaaaccatcaaggtcccaaaagggcc
agagaggccctgactggaaagatctttaaagattttgagatctgttgctgtggacccttc
actgatatgactacagagcatctggagtggatggtggagctctgtggtgcctctgtggtg
aagcggcctgacctgttcacacccacagcaaattctgctgctgttgtggttgtgcagcca
gatgcttggaaggaaaacgtggattatagagcaatgcagcagcagagcagcgttgccgtg
gtaactcgggagtgggtcctggacagcgtggcttgctaccagtgccaggagctcagtgct
tacctcgtgtcctga
DBGET
integrated database retrieval system
