Taeniopygia guttata (zebra finch): 100231632
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Entry
100231632 CDS
T01082
Symbol
RAPGEF6
Name
(RefSeq) rap guanine nucleotide exchange factor 6 isoform X1
KO
K08020
Rap guanine nucleotide exchange factor 6
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
100231632 (RAPGEF6)
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GFIT
Motif
Pfam:
RasGEF
RA
RasGEF_N
PDZ
cNMP_binding
PDZ_6
RA_2
PDZ_2
Motif
Other DBs
NCBI-GeneID:
100231632
NCBI-ProteinID:
XP_030140108
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All DBs
Position
13:8132592..8255441
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AA seq
1661 aa
AA seq
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MSAPVEPRIKQALRKKPAERTPEDLNTIYSFLHGLDILSHFREHQLRIMSSSARYERYKG
NQVLFCSETIARCWYILLSGSVLMKDSMFLPPCSFGKQSGGKRGCECIILEPSEMIVVEN
SKDNEENILQREVPLRQSRRRYRKINQRGERQTITDNVDSSSYMSLPADLTKMHLTDNPH
PQVTHVPSSQSGCSIASDSGSSSLSDIYQATESEMGDVDLTGLPEAPVDSEDEEEEEDED
IDRTSDPLLGRDVVRECLEKEPADKTDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIF
EVVEQAGAIILEDGQELDSWYVILNGTVEISYPDGKSESLCMGNSFGITPSLDKQYMNGV
VRTKVDDCQFVCIAQQDYWRILNHVEKNTHKVEEEGEIVMVKEHRELDRSGTRKGHIVIK
ATPERLIMHLIEEHSIVDPTYIEDFLLTYRTFLTSPLEVGNKLLEWFTVDSLRDKVTRVV
LLWVNNHFNDFEGDPAMTRFLEEFEKNLEDTKMKGHLRLLNIACAAKAKWRQITLQKPSR
DSPLFFSLLGGSDKGFGIFVETVEIGSKAAEAGLKRGDQIMEVNGQNFENITFVKALEIL
KNNTHLSITVKTNIFVFKELLCRIGQEKNGIPHIPKIAEKKNNRYSIPDMPGDVEQMFPR
EKGNKKMKANTVSGGRNRIRKILDKTRFSILPPKLFSDGSVSQSQDDSIVGTRQCRHSLA
IMPIPGTLSSSSPDLLQPTTSILDFSNPSAVGFYYIPDQVIRVFKADQQSCYIIISKDTT
AKEVVSHAVHEFNLTGAPETYSLCEVSVSPEGVIKQRRLPDQFSKLADRIQLNGRYYLKN
NMETETLCSDEDAQELLRESQISLLQLSTIEVATQLSMRDFELFRNIEPTEYIDDLYKLD
SKTGNAHLKQFEDVINQETFWVAMEILAEPNQLKRMKIIKHFIKIALHCRECKNFNSMFA
VISGLNLAPVARLRGTWEKLPSKYEKHLRDLQDLFDPSRNMAKYRNILSSQSMQPPIIPL
FPVVKKDITFLHEGNDSKVDGLVNFEKLRMIAKEIRQVVRMTSANMDPAVMFRQRKKRWR
SLGSLSQGSMNSNMLDVQGGAHKKRARRSSLLNAKKLYEDAQMARKVKQYLSNLIVETDE
EKIQILSLQCEPAYSTLTKNLSERRGGKSSEMSPVPMRSIGQTTKAHQHQQNRMSQVLQV
PSVNLYPSRKKGLTKDHVTFSTGSPQKSLSLSEEVSSKKQTDDTMSMASSLHSSPPASPQ
GSPRKVGNIQRSDNCSQMNLSGSSSSLASETSNKNSGQRSYGIGYALIPSTKSDNFSDSS
HSEISSRSSIVSNCSVDSMSAALQDERSLSQSLIVVDSSGAERKEHPQALTDYGQPCPGW
SITRPALIRGMAFTSSMSSEEISHEHITVEAADSGRGSWTSCSSSSHDNFQNIPNQKSWD
LLSSYRHTQLDGPIAEVDPANCYSEEGYLYSEAFSKANRQSKASMELDQSRQSWASSSSL
SDTYETNYGTIKRRGLENSTAEQTEALDSKPGADTTYKTVTSSTEKGLIVYCVTSPKKDD
RYREPPPTPPGYMGISLADIKEGSPHHPHLKPPDYSVAVQRSKMLHSDLSRLPAAAVGSE
PVACVSSRMPPWHGRQPSSPRVAELPDADSEEDEDEQVSAV
NT seq
4986 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccccggtggagcccaggatcaaacaggcgctgcggaaaaagcccgcggagcgc
actccggaggacttgaatactatttattctttccttcatgggctggacatactatcacat
ttcagggaacatcagctaagaataatgtcgtcaagtgcccgctatgagaggtacaagggc
aaccaagttctcttttgctcagaaacaattgcaagatgctggtatatcctgctttctgga
tctgtgctcatgaaggattcaatgtttttgccaccttgcagttttggcaagcagtctgga
ggaaagcgaggatgtgaatgtatcatattggaaccttcagaaatgattgtggtggagaac
tctaaagacaatgaggaaaacatcttgcagagagaagtgcccctccggcagtcccgtcgg
aggtacaggaagatcaaccagcggggtgaacgccagaccatcacggacaacgtggattcc
agcagctacatgtcgcttccagctgaccttaccaagatgcatctcacggacaatcctcat
ccccaggtgacgcatgtcccttcaagccagtcaggatgtagcattgccagtgattctggg
agcagcagcctgtctgatatttatcaggctacagaaagcgagatgggagatgttgatcta
acgggtcttcccgaagcacctgtagactctgaagatgaagaagaggaggaggatgaagat
attgacagaacttctgatccacttctagggcgagatgttgtccgagagtgccttgagaaa
gagcctgcagataaaactgatgatgacattgaacaattattggaattcatgcatcagctc
cctgcctttgcgaacatgaccatgtctgtgaggagagaactgtgctcagtgatgatattt
gaagtcgtagagcaagcaggagccatcatacttgaagacggccaggaacttgattcttgg
tatgttattttaaatggcacagtagaaatcagctatcctgacggaaagagtgagagtctc
tgtatgggaaatagttttgggattactccctcactggacaaacagtacatgaatggagtg
gtcagaactaaagtagatgattgtcagtttgtatgtatagcccagcaagactactggagg
attctgaaccatgtggaaaaaaacactcacaaagtggaggaagaaggagaaattgtgatg
gtaaaggagcacagggaactggatcgcagtggaaccaggaaaggacacatagttatcaag
gcaacacccgagagactcatcatgcacttaatagaggaacattctattgtggatccaacc
tacatcgaagattttcttttaacatacagaacatttctaacaagtcccttggaagttgga
aataaactcttggaatggttcacagtggacagcctcagggataaggttaccagggtagta
ttactgtgggtgaacaatcattttaatgattttgaaggagatcctgccatgactcgattc
ctggaagaatttgaaaagaacttggaagatacgaaaatgaaaggccatctcagattgctg
aatattgcctgtgctgccaaagcgaaatggagacaaatcaccctgcaaaaaccttccaga
gattcccccctgtttttcagccttcttggaggcagtgacaaggggtttggtatttttgta
gagactgtggagataggcagtaaagcagcagaagctggacttaagcgtggtgatcagata
atggaagtaaatggacagaattttgagaacattacctttgtaaaggctctggaaatctta
aagaataacacacatctctccattactgtaaaaacaaacatttttgtatttaaggagctg
ctctgcaggataggacaggagaagaatggaattccacatattccaaaaattgcagaaaag
aaaaacaaccgttattctatcccagatatgcctggagatgtggaacagatgtttccccgt
gaaaaaggaaacaagaaaatgaaagcaaacactgtatctggtggaagaaacagaatcagg
aaaattttagacaagactcgtttcagcatcttgcctccaaaactgttcagtgatggcagc
gtgagccagtcacaggacgacagcatcgtggggacacggcagtgccggcacagcctggcc
atcatgcccattccaggcaccctttcatctagtagccctgacctgctgcagcccacaacc
agcattctggatttctctaacccttcagctgttgggttttactacattccagatcaggtg
atacgagttttcaaagcagatcagcagagctgttacatcatcatcagcaaagacactaca
gccaaggaggtggtgagtcatgctgtccacgagttcaacctgacaggagcccccgagacc
tactccctgtgcgaggtgtccgtcagccccgagggggtcatcaagcagcgccgcctcccg
gatcagttctccaagctggctgacaggattcagctcaacggacggtattatctgaaaaac
aatatggaaacagaaacattatgctcagatgaggatgctcaagagctactccgcgagagc
caaatttccctgctgcagctgagcaccattgaggtggccactcagctttccatgcgggac
tttgaattgttccgcaacatcgagccaacggaatacatcgatgacctgtacaagctggac
tccaaaacagggaatgctcacctgaaacagtttgaggatgtcataaatcaagagaccttc
tgggttgccatggaaattttagcagaacccaaccaactcaaaagaatgaagattattaag
catttcattaaaattgctctccactgtcgagaatgcaagaactttaattccatgtttgca
gtgataagtgggttaaatcttgcaccggtagctcgtctcagaggcacttgggaaaagtta
cctagcaagtatgaaaagcacctcagagaccttcaagatctttttgatccatctcgaaac
atggcaaaatatcgcaacatcctcagcagccagagcatgcagcctccaattatcccactt
ttccctgttgtcaagaaagatatcacatttctgcatgaaggaaatgattctaaagtggat
ggcctggtaaattttgagaaactccggatgattgccaaagaaatccgccaagttgtccga
atgacctctgcaaacatggatccagctgtgatgttcagacaaaggaagaagaggtggaga
agtttggggtctctgagccagggcagcatgaactcgaacatgctggacgtgcagggaggc
gctcacaagaaacgcgcccgccgcagctcgctcctgaacgccaagaagctctacgaggat
gcccagatggcgaggaaggtgaagcagtacctgtccaacctcattgtagagacagatgaa
gagaagatccaaatactgtcacttcagtgtgagcctgcatacagcactttgacaaagaat
ttaagtgagagaagaggagggaaatcctctgaaatgtctccagtgcccatgagatccatt
ggccaaaccacaaaagcccatcagcatcaacaaaaccgaatgagtcaagttcttcaggtc
ccaagtgtgaatttgtaccccagcaggaaaaagggactgacaaaggatcatgtcacattc
agtacaggctctccacagaagtcattaagtttgtctgaggaagtaagtagtaagaaacaa
acagatgacactatgtccatggcatcttctttgcactccagcccacctgcttctcctcag
ggctccccacgtaaagttggcaacatccaaaggtcggataactgcagtcagatgaatctc
tctggctcttcctcatcactggccagtgaaaccagcaacaagaacagtggacagcgcagc
tatggaataggctatgccctcataccttccactaaatccgacaacttctcagactccagt
cacagtgagatctcctcccgctccagcatcgtgagcaactgctctgtggactccatgtca
gcagcactgcaggatgagaggagcttgtcccagtccctcatcgtggtggattccagcggg
gcagagagaaaggagcatcctcaggcactgacagattacggccagccctgcccaggctgg
tccatcactaggcctgctctgatcagagggatggcattcacatcttccatgagcagcgag
gagatctcccacgagcacatcacagtagaggcagcagacagtggccggggaagctggact
tcatgctcaagtagttctcatgacaatttccagaacatcccaaaccagaagagctgggat
ctcctcagctcttaccgccacacccagctggacggacctatagctgaagtggatcccgca
aactgttactctgaggagggttacttgtattccgaagccttctccaaagccaacaggcag
tcgaaagccagcatggagctggatcagtctcggcagagctgggcatcctccagctccctg
tcagacacttacgagacaaactatgggacaattaagcggagggggctggagaactccacg
gcagagcagacggaggctttggactctaaaccaggcgctgatacaacttacaaaactgtt
acttccagtacagaaaaaggcctgatagtgtactgtgtcacctcacctaagaaggacgat
aggtatagggagccaccgcccacccctccgggatatatggggatttctttagcggacatt
aaagaaggatcgccccaccacccacacctcaaacctccagactatagtgtggcagtgcag
aggtcaaagatgctgcacagtgacctctctagacttccagcagctgctgtcggtagtgag
ccggtggcctgtgtctcctcgaggatgcctccgtggcacggccggcagccctccagcccc
agagtagcagagctgcctgacgcagatagtgaagaggatgaagatgaacaagtatcagca
gtttaa
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