Taeniopygia guttata (zebra finch): 115490669
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Entry
115490669 CDS
T01082
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115490669 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tgu03041
]
115490669 (EFTUD2)
Spliceosome [BR:
tgu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
115490669 (EFTUD2)
Complex C
U5 SnRNP specific factors
115490669 (EFTUD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Septin
FANCL_d3
Motif
Other DBs
NCBI-GeneID:
115490669
NCBI-ProteinID:
XP_032599580
UniProt:
H0YV29
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All DBs
Position
27:3851979..3874267
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AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDDDDDELGREAKDLDELEDDDDDDDMGEHDEDHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFSLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDQDLCYTDILFTEQERGVG
IKSTPVTIVLPDTKGKSFLFNIIDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLVL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTYGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTTLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKTKIEHTYTGGVDSDLGEAMSECDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATVTEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKSLLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggacaccgacctgtacgacgagtttgggaactacatcgggcccgagctggactcggac
gatgacgatgacgagctgggccgagaggccaaagacctggacgagctggaggatgatgac
gatgatgatgacatgggggagcacgatgaggatcaccccgggatggaggtggtgctgcac
gaggacaagaagtactaccccacggcagaggaggtctatgggcctgaggtggagaccatc
gtgcaggaggaggacacacagccactcaccgagcccattatcaaacctgtgaaaaccaag
aagttctccctgatggagcagacgctgccggtcactgtctacgagatggatttcctggca
gatctgatggacaactcggagctgatccggaatgtgactctgtgtgggcacctgcaccat
ggcaagacgtgctttgttgactgcctgatagagcagacgcaccccgaaatccggaagcgc
gacgatcaggatctctgctacactgatatattgttcacagagcaggagaggggtgtgggg
atcaagagcaccccagtgacgattgttctgccagacaccaaaggaaagtctttcctcttc
aacatcattgacactccaggtcatgtgaatttttctgacgaggtgacagccggccttcgc
atctcggacggcgtcgtgctcttcatcgatgcggccgagggggtgatgctgaacacagag
aggctgatcaagcacgcggtgcaggagaggctggcagtgactgtgtgcatcaacaagatc
gacagactcatcctggagctgaaactgccccccacagacgcttattacaaactcagacac
attgtagacgaagttaatggtctgatcagcatgtattccaccgatgagaacctcgtgctg
tctccccttctggggaatgtgtgcttctccagctctcagtacagcatctgcttcacactg
gggtcttttgcaaagatttatgcagacacatatggagacatcaattaccaggagtttgca
aagcggctttggggcgacatctacttcaacccgaagacccgcaagttcaccaagaaggcc
ccgacgagcagttcccagcgcagcttcgtggagttcattctggagcccctgtacaagatc
ttggctcaggtggtgggggatgtggacacaaccctgcccaggactctggatgaacttggc
atccacctcaccaaagaggaattgaaactgaacatccggcccctgctgcggcttgtctgc
aagaagttctttggggagttcacaggctttgtggacatgtgtgtgcagcacattccctcc
ccaaaagtgggggccaagacaaaaattgagcacacctacaccggcggcgtggactccgac
ctgggggaggccatgagcgagtgcgaccctgacggtcccttgatgtgtcacacaaccaaa
atgtacagcactgatgatggtgtccagttccacgcctttggtagggtgctcagtggcacc
atccatgctgggcagcctgtgaaggtccttggggagaactacaccctggaagatgaggag
gattcccagatctgcaccgtcggacgcctctggatctcagttgcaaggtatcacattgag
gtgaacagagttcctgctggcaactgggtgctgatcgagggtgtggaccagcccatcgtg
aagacggcgactgtgacagagcctcggggcaatgaggaggctcagatcttccgtcccttg
aagttcaacaccacgtctgttatcaaaatagctgtggagccagtcaacccctcagagctc
cccaaaatgttggatggtctccgcaaagtcaacaagagctacccctcacttacaactaag
gtggaagagtctggggagcatgtgatcctgggaacaggagagctgtacctggactgtgtc
atgcacgacctgcggaagatgtactccgagatcgacatcaaggtggctgatccagtggtg
acattctgtgagacagtggtggaaacatcctccctgaagtgctttgctgagacacccaac
aagaagaacaagatcacaatgattgctgagcccctggagaagggcctggcagaggacatt
gagaacgaagtggtgcagataacatggaacagaaagaagctgggtgaattcttccagacc
aaatacgactgggatttgctggctgcccgttccatctgggcctttgggccggacgccact
ggcccaaacatcctggtggatgacacactgccctcagaggtggacaaatctctgctgggt
tcagtgaaggacagcattgtgcagggcttccagtgggggaccagggaaggacccctttgt
gatgaattgatccgcaatgtgaagttcaagatcctggacgcggtgattgctcaggagccc
ttgcacaggggtggagggcagatcatccccacggcccgcagggttgtgtactctgccttc
ctcatggccacccctcgcctgatggagccctactacttcgtggaggtgcaggcccctgct
gactgcgtgtccgccgtgtacacggtgctggcccggcgcagaggccacgtgacccaggat
gctccgatcccaggctctcccctctacaccatcaaagccttcatcccagccattgattcc
tttgggtttgagacagacttgaggacccacacacagggacaagccttctctctctctgtc
ttccaccactggcagattgtgcctggtgaccccttggacaagagcatcgtcatccggccg
ctggagccgcagccagccccacacctggccagggagttcatgatcaagaccaggcgcagg
aagggcctgagtgaggacgtgagcatcagcaagttcttcgacgaccccatgttgctggaa
ctggccaagcaagacgtcgttctcaactaccccatgtaa
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