Thalassotalea sp. LPB0316: LP316_13325
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Entry
LP316_13325 CDS
T08426
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
thab
Thalassotalea sp. LPB0316
Pathway
thab03030
DNA replication
thab03410
Base excision repair
thab03420
Nucleotide excision repair
thab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
thab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LP316_13325 (ligA)
03410 Base excision repair
LP316_13325 (ligA)
03420 Nucleotide excision repair
LP316_13325 (ligA)
03430 Mismatch repair
LP316_13325 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thab03032
]
LP316_13325 (ligA)
03400 DNA repair and recombination proteins [BR:
thab03400
]
LP316_13325 (ligA)
Enzymes [BR:
thab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LP316_13325 (ligA)
DNA replication proteins [BR:
thab03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LP316_13325 (ligA)
DNA repair and recombination proteins [BR:
thab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LP316_13325 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LP316_13325 (ligA)
MMR (mismatch excision repair)
DNA ligase
LP316_13325 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LP316_13325 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH_3
HHH
SPESP1
DZR_2
RTT107_BRCT_5
MazE_antitoxin
Motif
Other DBs
NCBI-ProteinID:
QOL25265
UniProt:
A0A7L9S518
LinkDB
All DBs
Position
complement(2957079..2959130)
Genome browser
AA seq
683 aa
AA seq
DB search
MSDQAIIDRIETLTNLLNDYNYQYYVLDEPTVPDIEYDRLMRELTALENEHPALKRADSP
SQKVGGEALKAFSQVTHQIPMLSLDNVFDQQEWQAFIKRVKERLKTSTQIAFCAEPKLDG
LAVSLRYQDGILVQAATRGDGSVGENITENIRTIKSIPLKLRGDNLPEVLEVRGEVFMPK
ASFEALNANAVKKGEKVFANPRNAAAGSLRQLDSKITASRNLAFYAYGLGFVGDLDGNDL
SEDVLPNSHYQRLTLVKSLGLPMCPEVKLLQNEDECQAFYQSILDARDALPYEIDGTVLK
VDSIEQQKSLGFVAKAPRWAMAYKFPAQEELTILEDVEFQVGRTGAITPVARLKPVYVGG
VTVSNATLHNQDEINRLGIKIGDTVTIRRAGDVIPQVVNAVVAKRPDNARDIVFPSTCPV
CDSAVERPENEAVLRCTGGLFCGAQQKEAIKHFASRKAMDVDGLGDKLVEQLVDEKLIKH
AADLYQLTEIQVSTLERMGQKSAQKLIRGLDESKSTTLAKFIYALGIREVGETTASNLAQ
HFLTFEAIRHASTEQLIEVNDVGSVVAKNIVSFFAQVHNNEVVDALLASGIHWPSIEVKS
ADEQPLADLTYVLTGTLSQMGRNDAKAHLQSLGAKVSGSVSAKTDYLVAGEKAGSKLTKA
QSLGVKVLSEDDLIALLKAHQVL
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaccaagcgataattgatcgtattgaaaccctgaccaatttattaaacgactac
aactatcaatactacgtgcttgacgagccaacggtacccgatattgagtacgaccgcttg
atgcgcgagctaacggcgttggaaaatgagcaccctgcgttaaaacgcgccgattcaccg
agccaaaaagtcggtggtgaagcacttaaagcattttcacaagtgactcatcaaataccg
atgttatcacttgataatgtctttgatcagcaagagtggcaggcgttcattaaacgggtt
aaagagcgtttaaaaacgtctactcagatagcgttttgtgctgaacctaaacttgatggt
ttagcagttagcctgcgctatcaagacggtatcttggtgcaagcggcaacccgtggcgac
ggcagtgtaggtgaaaacattaccgagaatattcgcacgataaaaagtatcccattgaag
cttcgcggtgataatttacccgaagttctggaagtgcgcggtgaagtatttatgccaaaa
gcgagttttgaagcgcttaatgccaatgccgttaaaaaaggtgaaaaggtctttgctaac
ccgcgaaatgcagcagcaggcagtttgcgtcaattagattcgaaaattacggcatcgcgt
aacttggcgttttacgcctatggcctaggtttcgttggcgatctcgacggcaatgactta
tctgaggacgtgttgccaaacagtcattatcaacgcttaaccttggtaaaatcgcttggc
ttaccgatgtgtccagaagtgaagcttttgcaaaatgaagacgagtgccaagcgttttat
caaagtattcttgatgctcgcgatgccttaccttatgaaattgacggtacggtattaaaa
gttgacagtatcgagcagcaaaaatcactcggttttgttgccaaagcaccacgctgggct
atggcgtataaatttcctgcgcaagaagaattaactattttagaagatgtcgagtttcaa
gtagggcgcaccggtgcaatcacgccagttgctcgccttaaaccggtttatgttggcggc
gttaccgtcagtaatgcaacgttacacaaccaagatgaaatcaatcgcttaggtattaaa
attggcgataccgtcaccattcgacgcgccggtgacgttattccacaagtagtgaatgcc
gttgttgctaaacgccctgataatgccagagatattgtttttcctagcacttgtccggtg
tgtgactctgccgttgagcggccagaaaacgaagcagtgttgcgctgtacgggcggtttg
ttttgtggcgcgcaacaaaaagaagcgataaaacactttgcttcaagaaaagcgatggac
gtagacggtctaggcgataaattagttgaacagttagttgatgaaaagctgataaagcac
gcggctgatttgtatcaactcaccgaaattcaagtgagtacattagagcgcatgggccaa
aaatcagcgcaaaaactgattcgcggtttagatgagagtaaatctacgaccttggcgaag
tttatttacgcgctgggtattcgcgaagtgggtgaaacgacggcgagtaatttagcccaa
cactttctaacctttgaagcgattcgccacgccagtacagaacagctcattgaagttaat
gatgttggtagtgttgttgcgaaaaatatcgtcagtttctttgctcaagtgcataataat
gaagtggttgacgctttattagccagcggtattcactggccgagtattgaagttaagtcg
gcagacgagcagccactcgctgatttaacctacgtattaaccggcacattaagccaaatg
gggcgtaatgacgccaaagctcacctacaaagccttggcgcaaaagtttcaggcagtgtg
tcagcaaaaaccgactacttagttgctggcgaaaaagcgggctcaaaattaacgaaagcg
caatctttaggggttaaagtactcagtgaagatgatttaattgcacttttaaaagcgcat
caggttttataa
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