KEGG   PATHWAY: thac02010
Entry
thac02010                   Pathway                                
Name
ABC transporters - Thalassospira marina
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
thac02010  ABC transporters
thac02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Thalassospira marina [GN:thac]
Gene
CSC3H3_01915  [KO:K02010] [EC:7.2.2.7]
CSC3H3_01920  [KO:K02012]
CSC3H3_01925  [KO:K02011]
CSC3H3_01955  [KO:K10111] [EC:7.5.2.-]
CSC3H3_01960  [KO:K10229]
CSC3H3_01965  [KO:K10228]
CSC3H3_01970  [KO:K10227]
CSC3H3_02300  [KO:K24821]
CSC3H3_02700  [KO:K01999]
CSC3H3_02705  [KO:K01997]
CSC3H3_02715  [KO:K01995]
CSC3H3_02720  [KO:K01996]
CSC3H3_02775  [KO:K10441] [EC:7.5.2.7]
CSC3H3_02780  [KO:K10440]
CSC3H3_02785  [KO:K10439]
CSC3H3_02905  [KO:K10543]
CSC3H3_02910  [KO:K10545] [EC:7.5.2.10]
CSC3H3_02915  [KO:K10544]
CSC3H3_03410  [KO:K11085] [EC:7.5.2.6]
CSC3H3_03565  phnE; phosphonate ABC transporter, permease protein PhnE [KO:K02042]
CSC3H3_03570  phnE; phosphonate ABC transporter, permease protein PhnE [KO:K02042]
CSC3H3_03575  phnC; phosphonate ABC transporter ATP-binding protein [KO:K02041] [EC:7.3.2.2]
CSC3H3_03580  [KO:K02044]
CSC3H3_03630  [KO:K12372]
CSC3H3_03635  [KO:K12371]
CSC3H3_03640  [KO:K12370]
CSC3H3_03645  [KO:K12369]
CSC3H3_03650  [KO:K12368]
CSC3H3_04585  [KO:K02471]
CSC3H3_04725  [KO:K02012]
CSC3H3_04730  [KO:K02011]
CSC3H3_04735  [KO:K02010] [EC:7.2.2.7]
CSC3H3_04915  [KO:K10112] [EC:7.5.2.-]
CSC3H3_05560  [KO:K10236]
CSC3H3_05565  [KO:K10237]
CSC3H3_05570  [KO:K10238]
CSC3H3_05580  [KO:K10111] [EC:7.5.2.-]
CSC3H3_05640  pstS; phosphate ABC transporter substrate-binding protein PstS [KO:K02040]
CSC3H3_05645  pstC; phosphate ABC transporter permease subunit PstC [KO:K02037]
CSC3H3_05650  pstA; phosphate ABC transporter, permease protein PstA [KO:K02038]
CSC3H3_05655  [KO:K02036] [EC:7.3.2.1]
CSC3H3_05685  [KO:K09815]
CSC3H3_06095  [KO:K23227]
CSC3H3_06170  [KO:K02071]
CSC3H3_06175  [KO:K02072]
CSC3H3_06180  [KO:K02073]
CSC3H3_07055  [KO:K11074]
CSC3H3_07060  [KO:K11075]
CSC3H3_07065  [KO:K11076] [EC:7.6.2.16]
CSC3H3_07070  [KO:K11073]
CSC3H3_07075  [KO:K11073]
CSC3H3_07275  mlaD; outer membrane lipid asymmetry maintenance protein MlaD [KO:K02067]
CSC3H3_07840  [KO:K15598]
CSC3H3_07845  [KO:K15599]
CSC3H3_07850  [KO:K15600]
CSC3H3_07925  [KO:K09817] [EC:7.2.2.20]
CSC3H3_07930  [KO:K09816]
CSC3H3_08285  [KO:K12536]
CSC3H3_08365  [KO:K02000] [EC:7.6.2.9]
CSC3H3_08370  [KO:K02001]
CSC3H3_08385  [KO:K02002]
CSC3H3_08390  [KO:K02001]
CSC3H3_08395  [KO:K02000] [EC:7.6.2.9]
CSC3H3_08405  [KO:K02002]
CSC3H3_08425  [KO:K02012]
CSC3H3_08430  [KO:K02011]
CSC3H3_08780  [KO:K07335]
CSC3H3_08785  [KO:K23537]
CSC3H3_08790  [KO:K23535]
CSC3H3_08795  [KO:K23536]
CSC3H3_08820  [KO:K01998]
CSC3H3_08825  [KO:K01997]
CSC3H3_08830  [KO:K01996]
CSC3H3_08835  [KO:K01995]
CSC3H3_08840  [KO:K01999]
CSC3H3_08855  [KO:K02065]
CSC3H3_08860  glnQ; glutamine ABC transporter ATP-binding protein [KO:K09972] [EC:7.4.2.1]
CSC3H3_08865  [KO:K09971]
CSC3H3_08870  [KO:K09970]
CSC3H3_08875  [KO:K09969]
CSC3H3_08995  [KO:K02006]
CSC3H3_09000  cbiQ; cobalt ECF transporter T component CbiQ [KO:K02008]
CSC3H3_09005  [KO:K16915]
CSC3H3_09010  [KO:K02007]
CSC3H3_09015  [KO:K10094]
CSC3H3_09170  [KO:K02010] [EC:7.2.2.7]
CSC3H3_09300  [KO:K10117]
CSC3H3_09305  [KO:K10118]
CSC3H3_09310  [KO:K10119]
CSC3H3_09315  [KO:K10111] [EC:7.5.2.-]
CSC3H3_09320  [KO:K11069]
CSC3H3_09325  [KO:K11072] [EC:7.6.2.11]
CSC3H3_09330  [KO:K11071]
CSC3H3_09335  [KO:K11070]
CSC3H3_09340  [KO:K05813]
CSC3H3_09345  [KO:K05814]
CSC3H3_09350  [KO:K05815]
CSC3H3_09355  [KO:K05816] [EC:7.6.2.10]
CSC3H3_09445  [KO:K10023]
CSC3H3_09450  [KO:K10024]
CSC3H3_09455  [KO:K10022]
CSC3H3_09460  [KO:K10025] [EC:7.4.2.1]
CSC3H3_09765  [KO:K01999]
CSC3H3_09775  [KO:K01996]
CSC3H3_09780  [KO:K01995]
CSC3H3_09785  [KO:K01998]
CSC3H3_09790  [KO:K01997]
CSC3H3_10225  [KO:K09810] [EC:7.6.2.-]
CSC3H3_10230  [KO:K09808]
CSC3H3_10455  [KO:K17315]
CSC3H3_10460  [KO:K17316]
CSC3H3_10465  [KO:K17317]
CSC3H3_10470  [KO:K10112] [EC:7.5.2.-]
CSC3H3_10585  [KO:K02002]
CSC3H3_10590  choW; choline ABC transporter permease subunit [KO:K02001]
CSC3H3_10595  choV; choline ABC transporter ATP-binding protein [KO:K02000] [EC:7.6.2.9]
CSC3H3_10610  [KO:K11071]
CSC3H3_10615  [KO:K11070]
CSC3H3_10620  [KO:K11069]
CSC3H3_10625  [KO:K11072] [EC:7.6.2.11]
CSC3H3_10695  [KO:K01996]
CSC3H3_10700  [KO:K01995]
CSC3H3_10705  [KO:K01998]
CSC3H3_10710  [KO:K01997]
CSC3H3_10715  [KO:K01999]
CSC3H3_11780  lptF; LPS export ABC transporter permease LptF [KO:K07091]
CSC3H3_11785  lptG; LPS export ABC transporter permease LptG [KO:K11720]
CSC3H3_11885  [KO:K02066]
CSC3H3_11890  [KO:K02065]
CSC3H3_12115  [KO:K10547]
CSC3H3_12120  [KO:K10548] [EC:7.5.2.-]
CSC3H3_12125  [KO:K10546]
CSC3H3_12160  [KO:K02010] [EC:7.2.2.7]
CSC3H3_12165  [KO:K02011]
CSC3H3_12170  [KO:K02012]
CSC3H3_12355  [KO:K11072] [EC:7.6.2.11]
CSC3H3_12360  [KO:K11071]
CSC3H3_12365  [KO:K11070]
CSC3H3_12370  [KO:K11069]
CSC3H3_12395  [KO:K01999]
CSC3H3_12615  [KO:K23509]
CSC3H3_12620  [KO:K23509]
CSC3H3_12625  [KO:K10820] [EC:7.5.2.9]
CSC3H3_12630  [KO:K23508]
CSC3H3_13765  [KO:K15580]
CSC3H3_13770  [KO:K15581]
CSC3H3_13775  [KO:K15582]
CSC3H3_13780  oppD; ABC transporter ATP-binding protein [KO:K15583]
CSC3H3_13785  [KO:K10823]
CSC3H3_14380  [KO:K01997]
CSC3H3_14570  [KO:K10112] [EC:7.5.2.-]
CSC3H3_14575  [KO:K17317]
CSC3H3_14580  [KO:K17316]
CSC3H3_14585  [KO:K17315]
CSC3H3_14830  [KO:K07323]
CSC3H3_14890  [KO:K02020]
CSC3H3_14895  [KO:K02018]
CSC3H3_14900  modC; molybdenum ABC transporter ATP-binding protein [KO:K02017] [EC:7.3.2.5]
CSC3H3_14940  [KO:K10112] [EC:7.5.2.-]
CSC3H3_15060  [KO:K23227]
CSC3H3_15065  [KO:K23228]
CSC3H3_15070  [KO:K10829] [EC:7.2.2.16]
CSC3H3_15675  [KO:K10552]
CSC3H3_15680  [KO:K10553]
CSC3H3_15685  [KO:K10554]
CSC3H3_15895  [KO:K10018]
CSC3H3_15900  [KO:K10021] [EC:7.4.2.1]
CSC3H3_15905  [KO:K10019]
CSC3H3_15910  [KO:K10020]
CSC3H3_16280  [KO:K01996]
CSC3H3_16285  [KO:K01999]
CSC3H3_16290  [KO:K01998]
CSC3H3_16295  [KO:K01997]
CSC3H3_16305  [KO:K01995]
CSC3H3_16330  ccmA; heme ABC exporter ATP-binding protein CcmA [KO:K02193] [EC:7.6.2.5]
CSC3H3_16335  ccmB; heme exporter protein CcmB [KO:K02194]
CSC3H3_16340  [KO:K02195]
CSC3H3_16345  ccmD; heme exporter protein CcmD [KO:K02196]
CSC3H3_16795  ftsE; cell division ATP-binding protein FtsE [KO:K09812]
CSC3H3_16800  [KO:K09811]
CSC3H3_16960  [KO:K02036] [EC:7.3.2.1]
CSC3H3_16965  pstA; phosphate ABC transporter, permease protein PstA [KO:K02038]
CSC3H3_16970  pstC; phosphate ABC transporter permease subunit PstC [KO:K02037]
CSC3H3_16975  [KO:K02040]
CSC3H3_17300  [KO:K12536]
CSC3H3_17375  [KO:K16783]
CSC3H3_17380  [KO:K16784] [EC:7.6.2.-]
CSC3H3_17385  [KO:K03523]
CSC3H3_17435  urtE; urea ABC transporter ATP-binding subunit UrtE [KO:K11963]
CSC3H3_17440  urtD; urea ABC transporter ATP-binding protein UrtD [KO:K11962]
CSC3H3_17445  urtC; urea ABC transporter permease subunit UrtC [KO:K11961]
CSC3H3_17450  urtB; urea ABC transporter permease subunit UrtB [KO:K11960]
CSC3H3_17460  urtA; urea ABC transporter substrate-binding protein [KO:K11959]
CSC3H3_17525  [KO:K07335]
CSC3H3_17530  [KO:K23536]
CSC3H3_17535  [KO:K23535]
CSC3H3_17540  [KO:K23537]
CSC3H3_17900  [KO:K13896]
CSC3H3_17905  [KO:K13895]
CSC3H3_17910  [KO:K13894]
CSC3H3_17915  [KO:K13893]
CSC3H3_18725  [KO:K02012]
CSC3H3_19235  lptB; LPS export ABC transporter ATP-binding protein [KO:K06861] [EC:7.5.2.5]
CSC3H3_19970  [KO:K12536]
CSC3H3_20085  [KO:K03523]
CSC3H3_20235  [KO:K02040]
CSC3H3_20700  [KO:K10558]
CSC3H3_20705  [KO:K10556]
CSC3H3_20710  [KO:K10557]
CSC3H3_20715  [KO:K10555]
CSC3H3_20880  [KO:K12541]
CSC3H3_21140  [KO:K10112] [EC:7.5.2.-]
CSC3H3_21350  [KO:K13892]
CSC3H3_21355  [KO:K13889]
CSC3H3_21360  [KO:K13890]
CSC3H3_21365  [KO:K13891]
CSC3H3_21380  [KO:K10111] [EC:7.5.2.-]
CSC3H3_21990  [KO:K10112] [EC:7.5.2.-]
CSC3H3_22030  [KO:K05685] [EC:7.6.2.-]
CSC3H3_22155  [KO:K23228]
CSC3H3_22160  [KO:K23227]
CSC3H3_22165  [KO:K10829] [EC:7.2.2.16]
CSC3H3_22355  [KO:K17202]
CSC3H3_22360  [KO:K17203]
CSC3H3_22365  [KO:K17204]
CSC3H3_22580  [KO:K09969]
CSC3H3_22585  [KO:K09970]
CSC3H3_22590  [KO:K09971]
CSC3H3_22595  glnQ; glutamine ABC transporter ATP-binding protein [KO:K09972] [EC:7.4.2.1]
CSC3H3_22900  [KO:K17315]
CSC3H3_22905  [KO:K17316]
CSC3H3_22910  [KO:K17317]
CSC3H3_22915  [KO:K10112] [EC:7.5.2.-]
CSC3H3_23210  [KO:K10537]
CSC3H3_23215  [KO:K10539] [EC:7.5.2.12]
CSC3H3_23220  [KO:K10538]
CSC3H3_23290  [KO:K17324]
CSC3H3_23295  [KO:K17325]
CSC3H3_23300  [KO:K17322]
CSC3H3_23305  [KO:K17323]
CSC3H3_23315  [KO:K17321]
CSC3H3_23370  [KO:K10018]
CSC3H3_23375  [KO:K10020]
CSC3H3_23380  [KO:K10019]
CSC3H3_23385  [KO:K10021] [EC:7.4.2.1]
CSC3H3_23780  [KO:K09972] [EC:7.4.2.1]
CSC3H3_23785  [KO:K09971]
CSC3H3_23790  [KO:K09970]
CSC3H3_23795  [KO:K09969]
CSC3H3_23880  nikE; nickel import ATP-binding protein NikE [KO:K10824] [EC:7.2.2.11]
CSC3H3_23885  nikD; nickel import ATP-binding protein NikD [KO:K15587] [EC:7.2.2.11]
CSC3H3_23890  [KO:K15586]
CSC3H3_23895  [KO:K15585]
CSC3H3_23900  nikA; nickel ABC transporter, nickel/metallophore periplasmic binding protein [KO:K15584]
CSC3H3_23910  [KO:K01999]
CSC3H3_23915  [KO:K01997]
CSC3H3_23920  [KO:K01998]
CSC3H3_23925  [KO:K01995]
CSC3H3_23930  [KO:K01996]
CSC3H3_23980  [KO:K02045] [EC:7.3.2.3]
CSC3H3_23985  cysW; sulfate ABC transporter permease subunit CysW [KO:K02047]
CSC3H3_23990  cysT; sulfate ABC transporter permease subunit CysT [KO:K02046]
CSC3H3_23995  [KO:K23163]
CSC3H3_24005  [KO:K10111] [EC:7.5.2.-]
CSC3H3_24065  [KO:K17207]
CSC3H3_24070  [KO:K17206]
CSC3H3_24075  [KO:K17205]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
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Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
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