Thauera sp. GDN1: CKCBHOJB_02019
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Entry
CKCBHOJB_02019 CDS
T09925
Symbol
ligA_2
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
thag
Thauera sp. GDN1
Pathway
thag03030
DNA replication
thag03410
Base excision repair
thag03420
Nucleotide excision repair
thag03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
thag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CKCBHOJB_02019 (ligA_2)
03410 Base excision repair
CKCBHOJB_02019 (ligA_2)
03420 Nucleotide excision repair
CKCBHOJB_02019 (ligA_2)
03430 Mismatch repair
CKCBHOJB_02019 (ligA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thag03032
]
CKCBHOJB_02019 (ligA_2)
03400 DNA repair and recombination proteins [BR:
thag03400
]
CKCBHOJB_02019 (ligA_2)
Enzymes [BR:
thag01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CKCBHOJB_02019 (ligA_2)
DNA replication proteins [BR:
thag03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CKCBHOJB_02019 (ligA_2)
DNA repair and recombination proteins [BR:
thag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CKCBHOJB_02019 (ligA_2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CKCBHOJB_02019 (ligA_2)
MMR (mismatch excision repair)
DNA ligase
CKCBHOJB_02019 (ligA_2)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CKCBHOJB_02019 (ligA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
WEN42427
LinkDB
All DBs
Position
2202186..2204282
Genome browser
AA seq
698 aa
AA seq
DB search
MDLFDSIGGDSPESAAGAGAPEVRAAALRAEIARHDHAYYVLDAPTIPDAEYDRLFRELQ
ALESEHPALRTPDSPTQRVGGKPLAQFPAVRHRIPMLSIRTETDTEASGALAFDARVRRE
LGLKDEDPPVEYAAELKFDGLAISLRYEDGVLVQAATRGDGETGEDVTGNVRTVKVIPLR
LRGEAPPVIEIRGEVYMRRDDFERLNVRQAEAGDKTFVNPRNAAAGSVRQLDPGIAARRP
LSFFAYGLGDTGEWTPPATHGEVLDAIAAFGLPVCAHRAVVQGAQGLADFHARIGALRDT
LPFDIDGVVYKVNSLALQQRMGFVTREPRWAVAHKYPAQEALTMLRDIEVQVGRTGALTP
VARLEPVFVGGVTVTNATLHNQDEIDRKDVRIGDWVIVRRAGDVIPEVVAPVVERRSGEL
PRFVLLDRFPTCPVCGSHVVRGEDEAVARCTGGLFCPAQRKQALLHFAGRRAMDIEGLGD
KLVDQLVDAAIVKTPVDLYRLGVLALANLERMGEKSAHKLLAAIESSRSTTLARFIFALG
IRNVGEATARDLARHFGNLDALLAAGVDALQQVPDVGPIVAKSIAEFFAEPHNREVIEQL
RAAGVHWTEGEPQGTVAGALAGKTFVLTGTLPTLTRDEAKAMIEARGGKVAGSVSKKTHY
VVAGAEAGSKLDKAQALGVSILDEDGLRALLNETDTNG
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggatctgttcgattcgatcgggggcgattcacccgaatcggccgcaggggcgggtgcg
cccgaagtgcgcgcggccgcgctgcgggcggagatcgcgcgccatgaccatgcctactac
gtgctcgacgcgccgacgatcccggatgccgagtacgaccgcctgttccgcgagctgcag
gcactcgagtccgaacatcccgcgctgcgcacacccgactcgccgacccagcgcgtaggc
ggcaagccgctcgcgcagttcccggcggtgcgccatcgcatcccgatgctctccatccgc
accgagaccgacaccgaggcgagcggggcgctcgccttcgatgcgcgcgtgcgccgcgag
ctcggcctcaaggacgaggacccgccggtcgaatacgccgccgaactcaagttcgacggc
ctggcgatcagcctgcgctacgaggacggcgtgctggtgcaggccgcgacccgtggcgac
ggcgagaccggcgaggacgtcaccggcaacgtacgcacggtcaaggtcatcccgctgcgc
ctgcgcggcgaggcgccgccggtgatcgagatccgcggcgaggtgtatatgcgccgcgac
gacttcgagcgcctgaatgtccgtcaggccgaggctggcgacaagaccttcgtcaatccg
cgcaacgccgctgcaggcagcgtccgccagctcgaccccggcatcgccgcgcgccggccg
ctttccttcttcgcctatgggctcggcgacaccggcgagtggacgccgcccgcgacccat
ggcgaagtgctcgacgccatcgccgcgttcgggctgcccgtgtgcgcgcaccgtgcggtg
gtgcagggcgcacagggcctggccgatttccacgcccgcatcggcgcgctgcgcgacacg
ctgcccttcgacatcgacggcgtggtgtacaaggtcaattcgctcgcgctgcagcagcgc
atgggcttcgtcacccgcgagccgcgctgggcggtggcgcacaagtatccggcgcaggag
gcgctgacgatgctgcgcgacatcgaggtccaggtcggccgcaccggcgcgctgaccccg
gtcgcccgtctggagccggtcttcgtcggcggggtcacggtcaccaacgccacgctccac
aaccaggacgagatcgaccgcaaggacgtgcgcatcggcgactgggtgatcgtgcgccgc
gccggcgacgtgatccccgaggtggtggcgccagttgtcgaacgccgcagcggcgagctg
ccgcgcttcgtgctgctggacaggtttcccacctgcccggtgtgcggctcgcacgtcgtg
cgcggcgaggacgaggcggtcgcgcgctgcaccggcgggctgttctgtccggcgcagcgc
aagcaggcgctgctgcacttcgccggccggcgcgcgatggacatcgagggcctgggcgac
aagctggtggaccagctcgtcgacgcggcgatagtcaagacgccggtcgacctctaccgc
ctcggcgtgctcgcgctggcgaacctcgagcgcatgggcgagaagtcggcgcacaagctg
ctggctgcgatcgagagcagccgcagcacgacgctggcgcggttcatcttcgcgctcggc
atccgcaacgtcggcgaggcgaccgcccgtgacctggcgcgccacttcggcaatctggat
gcgctgctggcggccggtgtcgacgcgctgcagcaggtccccgacgtcggcccgatcgtg
gcgaaatccatcgccgagttcttcgccgagccgcacaatcgcgaggtgatcgagcaactg
cgcgcggccggcgtgcattggaccgagggcgagccgcagggtacggtcgccggcgcgctc
gccggcaagaccttcgtgctcaccggcaccctgccgacgctcacccgcgacgaggccaag
gccatgatcgaggccaggggcggcaaggtcgccggctcggtgtcgaagaagacgcactac
gtggtggccggcgccgaggccggctccaagctcgacaaggcgcaggcgctcggcgtgagc
atcctcgacgaggacgggctgcgcgcactgctgaacgaaacggatacaaacggctga
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