Thalassospira sp. A40-3: IT893_14590
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Entry
IT893_14590 CDS
T08364
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
thai
Thalassospira sp. A40-3
Pathway
thai03030
DNA replication
thai03410
Base excision repair
thai03420
Nucleotide excision repair
thai03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
thai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IT893_14590 (ligA)
03410 Base excision repair
IT893_14590 (ligA)
03420 Nucleotide excision repair
IT893_14590 (ligA)
03430 Mismatch repair
IT893_14590 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thai03032
]
IT893_14590 (ligA)
03400 DNA repair and recombination proteins [BR:
thai03400
]
IT893_14590 (ligA)
Enzymes [BR:
thai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IT893_14590 (ligA)
DNA replication proteins [BR:
thai03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IT893_14590 (ligA)
DNA repair and recombination proteins [BR:
thai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IT893_14590 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IT893_14590 (ligA)
MMR (mismatch excision repair)
DNA ligase
IT893_14590 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IT893_14590 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
RNA_ligase
PSII_Pbs27
Motif
Other DBs
NCBI-ProteinID:
QPO10978
LinkDB
All DBs
Position
3161490..3163589
Genome browser
AA seq
699 aa
AA seq
DB search
MSAEHASNMSELPELPSSSTEARKQHAEISERIRSYNEAYHVNDDPLVSDATYDALFNRL
IELESHYPTLKKNSPTQEVGAAPAEGFAKVKHARPMLSLGNAFSREDIVDFLARIRRFLN
LTAHSPVEVVGEPKIDGLSLSLRYENRQLVTAATRGDGSEGEDVTANVAHINDIPKTLPD
DAPDVVEIRGEVYMARSAFQKLNATQAETGGKTFANPRNAAAGSLRQLDPSISAKRPLRF
FAYSFGELSESLAQNQWNFLQKVEGWGFVTNPLTRLLHNADDIMAFYDELATQRPDLDYD
IDGIVYKVNDFELQLRLGFVSRSPRWAIAHKFPAEKARTRVNAIEVQVGRTGALTPVARL
EPVTVGGVVVSNATLHNRDEIERLGVRVGDMVVIQRAGDVIPQVVEVILDERPEETSEYQ
FPDTCPKCGSHAMREEGEAVTRCTGGLICPAQAVERLKHFVSRTAFDIDGLGAKNVEAFF
ELGWLKSPGDIFRLESDHGDAIRKLEGWGEKSATKLFDGINERRTIGLDKFIYALGIRQI
GQATAKLLARHYGSLAEWRSAMVAANEADSEALRELINIDQIGPGVAKDLIEFMAEDHNR
EVLDDLQGLLTITDVEAPQVSDNPVNGKTVVFTGKLELFSRNEAKVKAESLGAKVAGSVS
AKTDYLVAGPGAGSKLKKAEELGVTVLDEQGWLDLIATE
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccgaacacgcgtcaaacatgtccgaacttcccgaattgccgtcttcgagcacg
gaggcgcgcaaacagcatgccgaaatttctgaacgtatccggtcttataacgaggcctat
cacgtcaatgacgacccgctggtttcggatgcgacatatgatgcgctgttcaatcgcctg
atcgaactggaatcccactatccgacgcttaagaaaaacagcccgacacaggaagtcggt
gccgctccggccgaaggctttgccaaggtcaagcatgcccgcccgatgctgtcacttggc
aatgcattttcgcgcgaagacattgtcgattttcttgcccgtattcgtcgcttcctgaac
ctgacggcgcacagcccggtcgaagtggttggcgaacccaagatcgacggcctttccctg
tcactgcgctacgaaaaccgccaactggtcacggctgccacccgtggggatggatcggag
ggcgaagacgttaccgccaatgtcgcccatattaacgacatccccaagacgcttcccgat
gatgcgcccgatgtcgtcgaaatccggggcgaggtttatatggcacgctctgcgtttcag
aaactgaacgcgacacaggccgaaaccggcggcaagacctttgccaatccgcgcaacgca
gcggcaggatcgcttcgccagcttgatccatcgatcagtgccaaacgcccgcttcgcttc
tttgcctatagctttggcgaactgtccgaaagcctggcccagaaccagtggaatttcctg
cagaaggttgaaggatggggctttgtcaccaatccgctgacccggttgcttcataatgcc
gatgacatcatggcgttctatgacgaactggcaacccagcgcccggatcttgattacgac
attgatggcattgtttataaggtcaatgactttgaactgcagctgcgccttggttttgtc
agccggtcaccacgctgggcgattgcgcacaaattcccggccgaaaaagcccgcacccgt
gtaaatgccatcgaagtacaggttggacgcaccggcgcactgaccccggttgcacgattg
gagccggtcaccgttggcggtgtggtggtatccaacgccaccctgcataaccgtgacgag
atcgaacgtcttggcgttcgggttggcgacatggtggtcattcagcgtgccggcgatgtc
atcccgcaggtggttgaagtcatccttgatgaacgcccggaagagaccagcgaatatcag
ttccctgacacctgcccgaaatgcggcagccacgccatgcgcgaagaaggcgaagccgtc
acccggtgcaccggcggcttgatctgcccggcacaggcggttgaacgcctgaaacatttc
gtatcgcgcacagcctttgatatcgatggcctgggggcgaaaaatgtcgaggcgttcttt
gaactgggttggctgaagtcgcctggcgatattttccgccttgaaagcgatcatggcgat
gccatccgcaagcttgaaggttggggcgaaaaatccgcaaccaagctgttcgacggcatc
aatgaacggcgcaccatcgggctcgacaagtttatctatgcacttggcattcgccagatt
ggacaggcaaccgcaaagcttctggcacgccattatggatcgcttgccgaatggcgcagt
gccatggttgcggccaatgaagccgacagcgaagcccttcgcgaactgatcaacattgat
cagatcggccccggtgttgccaaggacctgatcgaattcatggccgaagatcacaaccgc
gaggttcttgatgatctgcaagggcttttgaccatcaccgatgtagaagccccacaagtt
agcgacaatccggtcaatggcaaaaccgtcgtctttactggcaagctcgagttgttttca
cgcaacgaggccaaggtcaaagccgaaagtcttggtgcaaaggtcgccggatccgtatcg
gcaaaaaccgattatctggttgcaggaccgggtgcgggctccaaattaaagaaagcagaa
gaattaggtgttacagtgcttgatgaacagggatggcttgatctgattgccacggaataa
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integrated database retrieval system
