Candidatus Endolissoclinum faulkneri L2: A1OE_119
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Entry
A1OE_119 CDS
T02365
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
thal
Candidatus Endolissoclinum faulkneri L2
Pathway
thal03030
DNA replication
thal03410
Base excision repair
thal03420
Nucleotide excision repair
thal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
thal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A1OE_119 (ligA)
03410 Base excision repair
A1OE_119 (ligA)
03420 Nucleotide excision repair
A1OE_119 (ligA)
03430 Mismatch repair
A1OE_119 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thal03032
]
A1OE_119 (ligA)
03400 DNA repair and recombination proteins [BR:
thal03400
]
A1OE_119 (ligA)
Enzymes [BR:
thal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A1OE_119 (ligA)
DNA replication proteins [BR:
thal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A1OE_119 (ligA)
DNA repair and recombination proteins [BR:
thal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A1OE_119 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A1OE_119 (ligA)
MMR (mismatch excision repair)
DNA ligase
A1OE_119 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A1OE_119 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
DNA_ligase_ZBD
Zn_ribbon_NUD
Nlig-Ia
PTCB-BRCT
Zn_ribbon_ISL3
Motif
Other DBs
NCBI-ProteinID:
AFX98330
UniProt:
K7YFH0
LinkDB
All DBs
Position
110229..112316
Genome browser
AA seq
695 aa
AA seq
DB search
MDYIKYKAIEELSESEAKEELARLAKLIAKADVLYYQKNTPSMNDWEYDQLRLRNKAIEQ
RFPESKRYDSPSEIVAPGPAKGFTKVRHAHPMLSLTNAFDDEDVKEFTCRVRRLLKVPND
TPIAMMVEPKIDGLSISLRYENSKLVQGATRGDGMEGENVTRNLESIKEIPKILPKNVPK
VLEVRGEIYINKDDFLALNKRQANAGAKLFANPRNAAAGSLRQLDPQITRTRPLRFFAYS
WGGVSNFYADTQEECLKDLRQWNFTINPLSELHDNVEDVLKVYSKIAAKRCNLPYEIDGV
VYKINRIDWQNRLGVISRSPRWAIAHKFKTEQASTVLREIVIQVGRTGSLTPVARLKPIK
VGGVTVTNASLHNEDEIYRNDIRVGDTVMIHRAGDVIPQVIGVINDKRPNNSQQYIFPNY
CPSCGSKTVRLDDQSTRRCSNSINCSAQAIARLKHFVSREAFDINGFGAKQISQYYDWGI
IDTPASIFRLREHRNKLIGDKESKILSTDKLLTAIERRRVISLERFIYSLGIRQVGKSMA
GVLANHYGAIDTMRCALMQAVKMTSNAYLELININHVGDALVNELIDFFANFYNRKLIDE
LIKEITIKELKAPQVSDNYIAGKTMVFTGTLQSFRRDEAKSLVESLGAKVVTSVSKKIDY
IVVGVDPGYKAMQARGMGITVLTEEELFGLIKLIS
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggattatattaaatataaagcaattgaagaattgagtgaatcggaagcgaaagaagag
ctagctcgcctagctaaactcatcgctaaagcagatgtactttattatcagaaaaatacg
cctagtatgaatgactgggaatatgatcaattacgcttgcgtaacaaggcaattgagcaa
cgatttccagagtcgaaaagatatgatagcccaagcgagatcgtagcacctggaccagcg
aaaggctttaccaaagttcgccacgctcatccaatgttgtcgttaactaatgctttcgac
gatgaagatgttaaagagtttacatgtcgtgtacgtcgtctccttaaggttcccaatgac
acccctattgctatgatggttgagcccaaaattgacggtttatcaatttctttgcgctat
gaaaatagcaaactagttcaaggagcaactcgtggcgatggcatggaaggtgaaaatgtt
acgcgtaatcttgaaagtattaaagaaattcctaaaattttgccaaaaaatgtaccaaaa
gttctcgaggtgcgcggcgaaatttatattaacaaggatgattttcttgctttaaacaaa
cgccaagcgaatgctggtgctaagcttttcgctaacccacgtaatgctgctgctggctct
ctccggcagctagatcctcaaattactcgaaccagacctttgcgattttttgcatattct
tgggggggggttagtaatttttacgctgatacccaagaagaatgtcttaaggatttacga
caatggaattttactattaatccactatctgaactgcatgacaatgtggaggatgtgctt
aaagtttactcaaagattgctgcaaagcgttgcaacttaccttatgaaattgacggagtg
gtttacaagattaacagaattgattggcaaaatcggcttggcgtgattagtcgctcaccg
cgttgggctattgctcacaagtttaaaactgagcaagccagcactgttttgcgcgaaatt
gttattcaggtcggccgtactggtagcttaactccagtcgctcgattgaaaccgataaaa
gttggtggtgtgactgttactaacgcaagtttgcataacgaggatgaaatctaccgcaat
gacatccgggtgggtgatactgtaatgattcatcgcgcaggtgatgtaattcctcaagtg
attggagtgattaatgataaacgaccaaataattcacagcaatacatattccccaattat
tgcccaagctgcggctctaaaacagtccggctagatgatcaatcgacgcgccgctgcagc
aacagcataaactgctctgctcaggcgattgcgcgattaaaacattttgttagtcgtgag
gctttcgacattaacggctttggtgcaaaacagatatcacaatattatgattggggaata
attgatactccagctagcattttccgacttagggaacatcgtaataagcttattggtgat
aaagaaagtaagatactatctactgataaattgttaacagccattgagagaagacgagtg
ataagcttagagcgttttatttattccctgggaattcgccaagtaggaaaaagtatggct
ggggtactagctaatcattacggtgctatagataccatgcgctgtgcactaatgcaagca
gttaaaatgacaagtaatgcttatcttgagttgatcaatatcaatcatgttggagatgca
ttagtcaatgaattaattgattttttcgctaatttttacaacagaaaattgattgatgaa
ttaatcaaagaaattacaattaaagaacttaaggcacctcaagtatctgataattacatt
gctggcaaaaccatggtttttacaggtaccctgcagagttttcggcgcgatgaagctaaa
tcattagtagaatcgcttggtgctaaggttgttacatctgtgtcaaaaaaaatagattat
attgtagttggagtagatccaggctataaggcaatgcaggccaggggaatgggtatcaca
gtattaactgaagaggaattatttggtttgattaaacttatttcttag
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